Rh2AG460100

Belongs to the isocitrate and isopropylmalate dehydrogenases family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
67618085 .. 67635590
17506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG460100.1

Sequence Viewer

Length: 1608 bp
ATGATGCATTGTTTCCATGATGCAGGAGATGAAATGACTCGAATTTTCTGGAAATCTATAAAAGATAAGCTTATTTTGCCCTTTCTGGAACTGGATATCAAGTACTTTGATCTTGGCCTCCCTAATCGTGATGCCACCAGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATTCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGGAATGTTCCCCGCCTTGTTCCAGTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATTACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCTAGATTTGAAGCCTCATCGAAATATCCCTCCCCGACGGATATTATGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAAGGTGATGCTGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAACCTATATTGGAATCTACACTGTACGTAAGATTCAATACGGTGAAGAGATCACATTGGACTACAACTCTATTAAGGAGAGTAAGGAAGAATATGAAGCATCAGATTGTTTGTGCGGCAGTCAAGTTTGCCGGGGAGCTGAGTACGCAAAACTACCTATTATTCCACCGTATCTACAACCCGGCAATCAGCAATTTACATATGGTGCAAATTTTGCATCTGCAGGAGCTGGTGCTCTGGTTGAAACTTTCCACGGTTTGGTGATAGACCTTAATTCTCAACTTTCAAATTTTGAGCGAGTTCATGAGTCATTGAGGAAGAATTTAGGGGATGAAGAAGCCAACACTTTGATATCAAGAGCTGTTTACTTATTTAGTGTCGGAGGCAACGATTACTCATACATATTCGGGACAAACTCCAGCATCCAGCATCCTCACAGGGAATTTGTAGGAACTGTTCTAGGCAACATAACTGCAGCGATCAAAGAAGTATACAACAAAGGAGGAAGAAAATTTGGGTTTCTTAACCTTGATCCTCTTGGTTGTACACCGTACTCAAGAGCACTTGAGAAGAAACAAAAAGATGGATGCTTTGAAGAGATTACAGCGTATGTAGAACTCCACAATGAAGAACTTCCCAAACTCCTTCAAAAGCTGGAGACTGAACTCAAGGGATTTAGATACTCGCTTTCCAACTATAATGAGTTTCTGAGTGATAGGATAAATAACCCTTCTAAATATGTTGTGGGCTGCAAATTCAGCAGCTATTCAGCAGCCCTTGCACCTCCATGCCCATCAAATACACCAAAAAACGCCTGCAAACATGAATCTAGAGCATATCAAATTTCAATTCTCCAGCCACTCATTTAA

Protein Analysis

535

Amino Acids

60.56

Weight (kDa)

7.1

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 8 - 193 5e-24 Isocitrate/isopropylmalate dehydrogenase
Lipase_GDSL PF00657 302 - 482 1.2e-14 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 997
AccI GTMKAC 1 cut(s) 1230
AciI CCGC 3 cut(s) 337, 458, 855
AclWI GGATC 2 cut(s) 444, 1265
AcoI YGGCCR 2 cut(s) 494, 639
AcsI RAATTY 8 cut(s) 42, 949, 1027, 1060, 1181, 1250, 1493, 1581
AfaI GTAC 8 cut(s) 104, 182, 298, 351, 765, 884, 1285, 1292
AfiI CCNNNNNNNGG 2 cut(s) 648, 997
AflII CTTAAG 1 cut(s) 176
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 8 cut(s) 70, 170, 416, 878, 968, 1100, 1393, 1503
AluI AGCT 8 cut(s) 70, 170, 416, 878, 968, 1100, 1393, 1503
Alw21I GWGCWC 2 cut(s) 976, 1303
Alw26I GTCTC 1 cut(s) 1391
AlwI GGATC 2 cut(s) 444, 1265
AlwNI CAGNNNCTG 2 cut(s) 353, 968
AoxI GGCC 3 cut(s) 115, 494, 639
ApeKI GCWGC 4 cut(s) 1214, 1488, 1500, 1511
ApoI RAATTY 8 cut(s) 42, 949, 1027, 1060, 1181, 1250, 1493, 1581
Asp700I GAANNNNTTC 1 cut(s) 1371
AspS9I GGNCC 1 cut(s) 360
AsuC2I CCSGG 2 cut(s) 872, 921
AsuHPI GGTGA 3 cut(s) 704, 794, 1012
AvaII GGWCC 1 cut(s) 360
BalI TGGCCA 2 cut(s) 496, 641
BauI CACGAG 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 976, 1303
BbvI GCAGC 4 cut(s) 1226, 1475, 1512, 1523
BccI CCATC 6 cut(s) 350, 533, 670, 695, 1316, 1540
BciT130I CCWGG 1 cut(s) 563
BcnI CCSGG 2 cut(s) 872, 921
BcoDI GTCTC 1 cut(s) 1391
BfaI CTAG 3 cut(s) 591, 1199, 1569
BfmI CTRYAG 3 cut(s) 322, 960, 1212
BfrI CTTAAG 1 cut(s) 176
BglII AGATCT 1 cut(s) 587
BisI GCNGC 5 cut(s) 856, 1215, 1489, 1501, 1512
BlsI GCNGC 5 cut(s) 857, 1216, 1490, 1502, 1513
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 3 cut(s) 563, 872, 921
Bme18I GGWCC 1 cut(s) 360
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 3 cut(s) 563, 872, 921
BpmI CTGGAG 4 cut(s) 426, 1141, 1415, 1577
BpuEI CTTGAG 4 cut(s) 512, 1279, 1325, 1391
BpuMI CCSGG 2 cut(s) 872, 921
BsaAI YACGTR 1 cut(s) 767
BsaJI CCNNGG 2 cut(s) 871, 991
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 648, 997
Bse1I ACTGG 4 cut(s) 96, 138, 347, 403
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 2 cut(s) 871, 991
BseGI GGATG 5 cut(s) 466, 1075, 1161, 1168, 1331
BseLI CCNNNNNNNGG 2 cut(s) 648, 997
BseMII CTCAG 2 cut(s) 870, 1439
BseNI ACTGG 4 cut(s) 96, 138, 347, 403
BseRI GAGGAG 1 cut(s) 274
BseXI GCAGC 4 cut(s) 1226, 1475, 1512, 1523
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 3 cut(s) 117, 496, 641
BsiHKAI GWGCWC 2 cut(s) 976, 1303
BsiSI CCGG 2 cut(s) 871, 921
BslFI GGGAC 2 cut(s) 286, 1162
BslI CCNNNNNNNGG 2 cut(s) 648, 997
BsmAI GTCTC 1 cut(s) 1391
BsmFI GGGAC 2 cut(s) 286, 1162
BsnI GGCC 3 cut(s) 117, 496, 641
Bsp1286I GDGCHC 2 cut(s) 976, 1303
Bsp1407I TGTACA 1 cut(s) 1283
Bsp143I GATC 6 cut(s) 109, 449, 587, 789, 1218, 1270
BspACI CCGC 3 cut(s) 337, 458, 855
BspANI GGCC 3 cut(s) 117, 496, 641
BspCNI CTCAG 2 cut(s) 871, 1440
BspHI TCATGA 1 cut(s) 1042
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 3 cut(s) 326, 964, 1216
BspPI GGATC 2 cut(s) 444, 1265
BspTI CTTAAG 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 1283
BsrI ACTGG 4 cut(s) 96, 138, 347, 403
BssECI CCNNGG 2 cut(s) 871, 991
BssMI GATC 6 cut(s) 109, 449, 587, 789, 1218, 1270
BssNAI GTATAC 1 cut(s) 1231
BssSI CACGAG 1 cut(s) 225
Bst1107I GTATAC 1 cut(s) 1231
Bst2BI CACGAG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 7 cut(s) 301, 763, 782, 909, 995, 1195, 1290
Bst6I CTCTTC 3 cut(s) 650, 780, 1329
BstAFI CTTAAG 1 cut(s) 176
BstAPI GCANNNNNTGC 2 cut(s) 953, 1517
BstAUI TGTACA 1 cut(s) 1283
BstBAI YACGTR 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 1555
BstDEI CTNAG 3 cut(s) 506, 879, 1448
BstDSI CCRYGG 1 cut(s) 991
BstF5I GGATG 5 cut(s) 466, 1075, 1161, 1168, 1331
BstKTI GATC 6 cut(s) 112, 452, 590, 792, 1221, 1273
BstMAI GTCTC 1 cut(s) 1391
BstMBI GATC 6 cut(s) 109, 449, 587, 789, 1218, 1270
BstMWI GCNNNNNNNGC 5 cut(s) 76, 884, 953, 1497, 1517
BstNI CCWGG 1 cut(s) 563
BstSCI CCNGG 3 cut(s) 561, 870, 919
BstSFI CTRYAG 3 cut(s) 322, 960, 1212
BstSNI TACGTA 1 cut(s) 767
BstV1I GCAGC 4 cut(s) 1226, 1475, 1512, 1523
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
BstZ17I GTATAC 1 cut(s) 1231
BsuRI GGCC 3 cut(s) 117, 496, 641
BtgI CCRYGG 1 cut(s) 991
BtsCI GGATG 5 cut(s) 466, 1075, 1161, 1168, 1331
BtsIMutI CAGTG 3 cut(s) 145, 432, 759
Cac8I GCNNGC 1 cut(s) 1555
CaiI CAGNNNCTG 2 cut(s) 353, 968
CciI TCATGA 1 cut(s) 1042
Cfr13I GGNCC 1 cut(s) 360
Csp6I GTAC 8 cut(s) 103, 181, 297, 350, 764, 883, 1284, 1291
CviAII CATG 6 cut(s) 17, 643, 730, 1043, 1527, 1562
CviQI GTAC 8 cut(s) 103, 181, 297, 350, 764, 883, 1284, 1291
DdeI CTNAG 3 cut(s) 506, 879, 1448
DpnI GATC 6 cut(s) 111, 451, 589, 791, 1220, 1272
DpnII GATC 6 cut(s) 109, 449, 587, 789, 1218, 1270
DraI TTTAAA 1 cut(s) 291
EaeI YGGCCR 2 cut(s) 494, 639
Eam1104I CTCTTC 3 cut(s) 650, 780, 1329
EarI CTCTTC 3 cut(s) 650, 780, 1329
Eco105I TACGTA 1 cut(s) 767
Eco32I GATATC 2 cut(s) 97, 1092
Eco47I GGWCC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 561
EcoRV GATATC 2 cut(s) 97, 1092
EcoT22I ATGCAT 3 cut(s) 9, 466, 735
FaeI CATG 6 cut(s) 20, 646, 733, 1046, 1530, 1565
FalI AAGNNNNNCTT 6 cut(s) 54, 86, 159, 191, 542, 574
FaqI GGGAC 2 cut(s) 286, 1162
FatI CATG 6 cut(s) 16, 642, 729, 1042, 1526, 1561
FauI CCCGC 1 cut(s) 344
FauNDI CATATG 1 cut(s) 940
FblI GTMKAC 1 cut(s) 1230
Fnu4HI GCNGC 5 cut(s) 856, 1215, 1489, 1501, 1512
FokI GGATG 5 cut(s) 473, 1082, 1148, 1155, 1338
Fsp4HI GCNGC 5 cut(s) 856, 1215, 1489, 1501, 1512
FspBI CTAG 3 cut(s) 591, 1199, 1569
GluI GCNGC 5 cut(s) 856, 1215, 1489, 1501, 1512
GsuI CTGGAG 4 cut(s) 426, 1141, 1415, 1577
HaeIII GGCC 3 cut(s) 117, 496, 641
HapII CCGG 2 cut(s) 871, 921
Hin1II CATG 6 cut(s) 20, 646, 733, 1046, 1530, 1565
HindIII AAGCTT 1 cut(s) 68
HpaII CCGG 2 cut(s) 871, 921
HphI GGTGA 3 cut(s) 704, 794, 1012
Hpy166II GTNNAC 3 cut(s) 1105, 1231, 1286
Hpy188I TCNGA 5 cut(s) 282, 449, 844, 1121, 1449
Hpy8I GTNNAC 3 cut(s) 1105, 1231, 1286
Hpy99I CGWCG 1 cut(s) 628
HpyAV CCTTC 2 cut(s) 1394, 1479
HpyCH4III ACNGT 7 cut(s) 301, 763, 782, 909, 995, 1195, 1290
HpyCH4IV ACGT 1 cut(s) 766
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 884, 953, 1497, 1517
HpyF3I CTNAG 3 cut(s) 506, 879, 1448
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 6 cut(s) 20, 646, 733, 1046, 1530, 1565
Kzo9I GATC 6 cut(s) 109, 449, 587, 789, 1218, 1270
LmnI GCTCC 2 cut(s) 875, 965
Lsp1109I GCAGC 4 cut(s) 1226, 1475, 1512, 1523
MaeI CTAG 3 cut(s) 591, 1199, 1569
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 1 cut(s) 148
MalI GATC 6 cut(s) 111, 451, 589, 791, 1220, 1272
MboI GATC 6 cut(s) 109, 449, 587, 789, 1218, 1270
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 2 cut(s) 976, 1303
MlsI TGGCCA 2 cut(s) 496, 641
MluNI TGGCCA 2 cut(s) 496, 641
MlyI GAGTC 6 cut(s) 31, 156, 271, 449, 667, 1055
MmeI TCCRAC 2 cut(s) 1099, 1455
Mox20I TGGCCA 2 cut(s) 496, 641
Mph1103I ATGCAT 3 cut(s) 9, 466, 735
MroXI GAANNNNTTC 1 cut(s) 1371
MscI TGGCCA 2 cut(s) 496, 641
MseI TTAA 7 cut(s) 177, 231, 290, 813, 1011, 1263, 1606
MslI CAYNNNNRTG 1 cut(s) 1525
Msp20I TGGCCA 2 cut(s) 496, 641
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 2 cut(s) 871, 921
MspR9I CCNGG 3 cut(s) 563, 872, 921
MunI CAATTG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 563
MwoI GCNNNNNNNGC 5 cut(s) 76, 884, 953, 1497, 1517
NciI CCSGG 2 cut(s) 872, 921
NdeI CATATG 1 cut(s) 940
NdeII GATC 6 cut(s) 109, 449, 587, 789, 1218, 1270
NlaIII CATG 6 cut(s) 20, 646, 733, 1046, 1530, 1565
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 148
NsiI ATGCAT 3 cut(s) 9, 466, 735
PagI TCATGA 1 cut(s) 1042
PcsI WCGNNNNNNNCGW 1 cut(s) 1125
PdmI GAANNNNTTC 1 cut(s) 1371
PfeI GAWTC 4 cut(s) 546, 753, 772, 1565
PflMI CCANNNNNTGG 1 cut(s) 997
PfoI TCCNGGA 1 cut(s) 561
PkrI GCNGC 5 cut(s) 857, 1216, 1490, 1502, 1513
PleI GAGTC 6 cut(s) 31, 155, 270, 448, 666, 1054
PpsI GAGTC 6 cut(s) 31, 155, 270, 448, 666, 1054
Ppu21I YACGTR 1 cut(s) 767
Psp6I CCWGG 1 cut(s) 561
PspGI CCWGG 1 cut(s) 561
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 360
PsrI GAACNNNNNNTAC 2 cut(s) 1179, 1211
PstI CTGCAG 3 cut(s) 326, 964, 1216
PstNI CAGNNNCTG 2 cut(s) 353, 968
PsuI RGATCY 1 cut(s) 587
RsaI GTAC 8 cut(s) 104, 182, 298, 351, 765, 884, 1285, 1292
RsaNI GTAC 8 cut(s) 103, 181, 297, 350, 764, 883, 1284, 1291
RseI CAYNNNNRTG 1 cut(s) 1525
SaqAI TTAA 7 cut(s) 177, 231, 290, 813, 1011, 1263, 1606
SatI GCNGC 5 cut(s) 856, 1215, 1489, 1501, 1512
Sau3AI GATC 6 cut(s) 109, 449, 587, 789, 1218, 1270
Sau96I GGNCC 1 cut(s) 360
ScaI AGTACT 1 cut(s) 104
SchI GAGTC 6 cut(s) 31, 156, 271, 449, 667, 1055
ScrFI CCNGG 3 cut(s) 563, 872, 921
SduI GDGCHC 2 cut(s) 976, 1303
SfcI CTRYAG 3 cut(s) 322, 960, 1212
SinI GGWCC 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 1525
SmlI CTYRAG 5 cut(s) 176, 527, 1294, 1304, 1406
SmoI CTYRAG 5 cut(s) 176, 527, 1294, 1304, 1406
SnaBI TACGTA 1 cut(s) 767
SsiI CCGC 3 cut(s) 337, 458, 855
SspMI CTAG 3 cut(s) 591, 1199, 1569
StyD4I CCNGG 3 cut(s) 561, 870, 919
TaaI ACNGT 7 cut(s) 301, 763, 782, 909, 995, 1195, 1290
TaiI ACGT 1 cut(s) 769
TaqI TCGA 2 cut(s) 40, 608
TatI WGTACW 3 cut(s) 102, 180, 1283
TauI GCSGC 1 cut(s) 858
TfiI GAWTC 4 cut(s) 546, 753, 772, 1565
Tru1I TTAA 7 cut(s) 177, 231, 290, 813, 1011, 1263, 1606
Tru9I TTAA 7 cut(s) 177, 231, 290, 813, 1011, 1263, 1606
TscAI CASTG 3 cut(s) 145, 439, 766
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 4 cut(s) 1214, 1488, 1500, 1511
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 9 cut(s) 45, 234, 485, 588, 849, 1031, 1086, 1380, 1578
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 3 cut(s) 145, 439, 766
Van91I CCANNNNNTGG 1 cut(s) 997
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 360
XapI RAATTY 8 cut(s) 42, 949, 1027, 1060, 1181, 1250, 1493, 1581
XbaI TCTAGA 2 cut(s) 590, 1568
XmiI GTMKAC 1 cut(s) 1230
XmnI GAANNNNTTC 1 cut(s) 1371
XspI CTAG 3 cut(s) 591, 1199, 1569
ZrmI AGTACT 1 cut(s) 104
Zsp2I ATGCAT 3 cut(s) 9, 466, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.