pycom05g21730

Belongs to the isocitrate and isopropylmalate dehydrogenases family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
24286059 .. 24289808
3750 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21730.14

Sequence Viewer

Length: 1503 bp
ATGTATTGGGAATTGAGACCAATTATTAACACGGCACGGACTTGCACTCTCAATCTGATCGAGAACTACATCGTTTTTGTCGTCACTCACTCTCATTTCTCAATTCCCAATTCATCCACCGACATTTCAATTTCCATAACTAACAGCAAATTTACACTTTTCAGTTTGACTGCTTCTAATTTCTCTCTCGCCAAAGACCAAAGCTTGCGAGGCAAAAAGCACGAAACTTTCACCTCTTTTGGTGTCAGGGGAGAAATGGAGGCGTTCGATAAGATCAAGGTGACCAACCCAATTGTCGAAATGGACGGAGATGAAATGACTCGGGTGTTCTGGAAATGGATTAAAGACAAGCTTATCTTTCCCTTTCTGGAGTTGGATATCAAGTACTTTGATCTCGGGATCCTTAATCGTGATGCCACCAATGACAGAGTCACAATTGAAAGTGCTGAAGCTACTCTTAAGTACAATGTTGCAATAAAGTGTGCAACCATAACTCCTGATGAAACTCGTGTGAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAACGGGACAATACGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGTCTTGTTCCAGGTTGGACAATGCCAATATGTATCGGGAGACATGCTTTTGGTGATCAGTACCGAGCAACTGATGCAATCATAGAAGGACCTGGAAAACTTAAAATGGTTTTTGTACCTGATGGGTCCAATGAGAAGACAGAGTGGGAGGTTTACAAATTTACTGGCGCAGGAGGCATAGCTTTGTCCATGTATAACACAGATGAGTCAATCCGTGCTTTTGCTGAGGCTTCCATGAACACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTGAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAGCTCATTGGAGATCAAGATATGAGGCTGCGGGGATTTGGTATGAACACCGTCTTATTGATGATATGGTTGCCTATGCTCTCAAAAGTGAAGGAGGTTATGTTTGGGCATGCAAAAATTATGATGGGGATGTGCAAAGTGACTTCTTGGCCCAAGGTTTTGGATCTCTGGGGCTGATGACGTCTATACTGGTGTGCCCAGATGGAAAGACCATTGAAGCTGAAGCAGCCCATGGTACAGTAACCCGCCATTACCGGATCGACCAGAAAGGAGGCGAAACAAGCACAAACAGCATAGCTAATATGATCGATCTTTGCATGGTCACGAGGGCAAAGTTAGATGGCAATGCCAGACTATTGGATTTTACAGAGAAACTTGAAGCATCTTGCGTAGGAACCGTCGAATCTGGGAAGATGACCAAGGATCTTGCACTCCTCATCCATGGGCCTAAGGTCACTAGGTCTCAGTATCTGAATACCGAAGAATTTATAGACGCCGTGGCTGATGAGTTGAGAGTTAGATTGTCTAGCAGAGCGAAGTTGTAA

Protein Analysis

501

Amino Acids

56.66

Weight (kDa)

6.78

Isoelectric Point (pI)

25.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1142
AciI CCGC 2 cut(s) 989, 1204
AclWI GGATC 5 cut(s) 394, 407, 1129, 1223, 1389
AcoI YGGCCR 1 cut(s) 878
AcsI RAATTY 3 cut(s) 149, 776, 1442
AcuI CTGAAG 3 cut(s) 468, 932, 1200
AcyI GRCGYC 2 cut(s) 1139, 1452
AfaI GTAC 6 cut(s) 386, 464, 580, 680, 735, 1195
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 7 cut(s) 129, 440, 523, 529, 934, 1175, 1337
AjnI CCWGG 3 cut(s) 628, 709, 945
AluBI AGCT 7 cut(s) 204, 352, 452, 800, 962, 1178, 1256
AluI AGCT 7 cut(s) 204, 352, 452, 800, 962, 1178, 1256
Alw26I GTCTC 3 cut(s) 10, 652, 1425
AlwI GGATC 5 cut(s) 394, 407, 1129, 1223, 1389
AlwNI CAGNNNCTG 1 cut(s) 1429
Ama87I CYCGRG 2 cut(s) 321, 395
AoxI GGCC 3 cut(s) 878, 1107, 1403
ApeKI GCWGC 2 cut(s) 986, 1184
ApoI RAATTY 3 cut(s) 149, 776, 1442
Asp700I GAANNNNTTC 1 cut(s) 518
AspLEI GCGC 1 cut(s) 788
AspS9I GGNCC 4 cut(s) 707, 744, 1108, 1403
AsuHPI GGTGA 3 cut(s) 223, 292, 683
AvaI CYCGRG 2 cut(s) 321, 395
AvaII GGWCC 2 cut(s) 707, 744
AxyI CCTNAGG 1 cut(s) 1407
BaeGI GKGCMC 1 cut(s) 1157
BalI TGGCCA 1 cut(s) 880
BamHI GGATCC 1 cut(s) 399
BauI CACGAG 2 cut(s) 507, 1282
BbsI GAAGAC 1 cut(s) 761
BbvCI CCTCAGC 1 cut(s) 843
BbvI GCAGC 2 cut(s) 973, 1196
BccI CCATC 5 cut(s) 734, 917, 1076, 1154, 1292
BceAI ACGGC 2 cut(s) 48, 1439
BciT130I CCWGG 3 cut(s) 630, 711, 947
BclI TGATCA 1 cut(s) 673
BcoDI GTCTC 3 cut(s) 10, 652, 1425
BfaI CTAG 2 cut(s) 1416, 1485
BfmI CTRYAG 1 cut(s) 604
BfrI CTTAAG 1 cut(s) 458
BisI GCNGC 2 cut(s) 987, 1185
BlsI GCNGC 2 cut(s) 988, 1186
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 3 cut(s) 630, 711, 947
Bme18I GGWCC 2 cut(s) 707, 744
BmeT110I CYCGRG 2 cut(s) 321, 395
BmgT120I GGNCC 4 cut(s) 707, 744, 1108, 1403
BmiI GGNNCC 3 cut(s) 401, 745, 1354
BmrFI CCNGG 3 cut(s) 630, 711, 947
BmsI GCATC 3 cut(s) 403, 682, 1349
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 1 cut(s) 389
Bpu10I CCTNAGC 1 cut(s) 843
Bsa29I ATCGAT 1 cut(s) 1266
BsaHI GRCGYC 2 cut(s) 1139, 1452
BsaI GGTCTC 2 cut(s) 10, 1425
BsaJI CCNNGG 5 cut(s) 1111, 1189, 1377, 1399, 1455
BsaWI WCCGGW 1 cut(s) 1212
BsaXI ACNNNNNCTCC 4 cut(s) 478, 508, 1044, 1074
Bse1I ACTGG 2 cut(s) 787, 1152
Bse21I CCTNAGG 1 cut(s) 1407
Bse3DI GCAATG 1 cut(s) 1309
BseBI CCWGG 3 cut(s) 630, 711, 947
BseCI ATCGAT 1 cut(s) 1266
BseDI CCNNGG 5 cut(s) 1111, 1189, 1377, 1399, 1455
BseGI GGATG 3 cut(s) 113, 1093, 1395
BseMI GCAATG 1 cut(s) 1309
BseMII CTCAG 2 cut(s) 834, 1436
BseNI ACTGG 2 cut(s) 787, 1152
BseRI GAGGAG 2 cut(s) 556, 1382
BseSI GKGCMC 1 cut(s) 1157
BseXI GCAGC 2 cut(s) 973, 1196
BshFI GGCC 3 cut(s) 880, 1109, 1405
BshVI ATCGAT 1 cut(s) 1266
BsiHKCI CYCGRG 2 cut(s) 321, 395
BsiSI CCGG 1 cut(s) 1213
BslFI GGGAC 1 cut(s) 568
BsmAI GTCTC 3 cut(s) 10, 652, 1425
BsmFI GGGAC 1 cut(s) 568
BsnI GGCC 3 cut(s) 880, 1109, 1405
Bso31I GGTCTC 2 cut(s) 10, 1425
BsoBI CYCGRG 2 cut(s) 321, 395
Bsp1286I GDGCHC 1 cut(s) 1157
Bsp19I CCATGG 2 cut(s) 1189, 1399
BspACI CCGC 2 cut(s) 989, 1204
BspANI GGCC 3 cut(s) 880, 1109, 1405
BspCNI CTCAG 2 cut(s) 835, 1435
BspDI ATCGAT 1 cut(s) 1266
BspLI GGNNCC 3 cut(s) 401, 745, 1354
BspMAI CTGCAG 1 cut(s) 608
BspPI GGATC 5 cut(s) 394, 407, 1129, 1223, 1389
BspTI CTTAAG 1 cut(s) 458
BspTNI GGTCTC 2 cut(s) 10, 1425
BsrDI GCAATG 1 cut(s) 1309
BsrI ACTGG 2 cut(s) 787, 1152
BssECI CCNNGG 5 cut(s) 1111, 1189, 1377, 1399, 1455
BssNI GRCGYC 2 cut(s) 1139, 1452
BssSI CACGAG 2 cut(s) 507, 1282
BssT1I CCWWGG 4 cut(s) 1111, 1189, 1377, 1399
Bst2BI CACGAG 2 cut(s) 507, 1282
Bst2UI CCWGG 3 cut(s) 630, 711, 947
Bst4CI ACNGT 4 cut(s) 583, 1010, 1198, 1357
BstACI GRCGYC 2 cut(s) 1139, 1452
BstAFI CTTAAG 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 206, 1069
BstDEI CTNAG 4 cut(s) 843, 890, 1407, 1422
BstDSI CCRYGG 3 cut(s) 1189, 1399, 1455
BstEII GGTNACC 1 cut(s) 280
BstF5I GGATG 3 cut(s) 113, 1093, 1395
BstHHI GCGC 1 cut(s) 788
BstMAI GTCTC 3 cut(s) 10, 652, 1425
BstMWI GCNNNNNNNGC 6 cut(s) 210, 692, 792, 1184, 1239, 1248
BstNI CCWGG 3 cut(s) 630, 711, 947
BstNSI RCATGY 2 cut(s) 665, 1071
BstPI GGTNACC 1 cut(s) 280
BstSCI CCNGG 3 cut(s) 628, 709, 945
BstSFI CTRYAG 1 cut(s) 604
BstSLI GKGCMC 1 cut(s) 1157
BstV1I GCAGC 2 cut(s) 973, 1196
BstV2I GAAGAC 1 cut(s) 761
BstX2I RGATCY 3 cut(s) 399, 1121, 1381
BstXI CCANNNNNNTGG 2 cut(s) 1118, 1315
BstYI RGATCY 3 cut(s) 399, 1121, 1381
Bsu15I ATCGAT 1 cut(s) 1266
Bsu36I CCTNAGG 1 cut(s) 1407
BsuRI GGCC 3 cut(s) 880, 1109, 1405
BsuTUI ATCGAT 1 cut(s) 1266
BtgI CCRYGG 3 cut(s) 1189, 1399, 1455
BtsCI GGATG 3 cut(s) 113, 1093, 1395
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 1 cut(s) 858
Cac8I GCNNGC 2 cut(s) 206, 1069
CaiI CAGNNNCTG 1 cut(s) 1429
CfoI GCGC 1 cut(s) 788
Cfr13I GGNCC 4 cut(s) 707, 744, 1108, 1403
ClaI ATCGAT 1 cut(s) 1266
CseI GACGC 1 cut(s) 1460
Csp6I GTAC 6 cut(s) 385, 463, 579, 679, 734, 1194
CviAII CATG 7 cut(s) 662, 808, 853, 1068, 1190, 1276, 1400
CviQI GTAC 6 cut(s) 385, 463, 579, 679, 734, 1194
DdeI CTNAG 4 cut(s) 843, 890, 1407, 1422
DraI TTTAAA 1 cut(s) 573
EaeI YGGCCR 1 cut(s) 878
Eco130I CCWWGG 4 cut(s) 1111, 1189, 1377, 1399
Eco31I GGTCTC 2 cut(s) 10, 1425
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 707, 744
Eco57I CTGAAG 3 cut(s) 468, 932, 1200
Eco81I CCTNAGG 1 cut(s) 1407
Eco88I CYCGRG 2 cut(s) 321, 395
Eco91I GGTNACC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 707
EcoO65I GGTNACC 1 cut(s) 280
EcoRII CCWGG 3 cut(s) 628, 709, 945
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 4 cut(s) 1111, 1189, 1377, 1399
ErhI CCWWGG 4 cut(s) 1111, 1189, 1377, 1399
FaeI CATG 7 cut(s) 665, 811, 856, 1071, 1193, 1279, 1403
FalI AAGNNNNNCTT 8 cut(s) 336, 368, 341, 373, 441, 473, 926, 958
FaqI GGGAC 1 cut(s) 568
FatI CATG 7 cut(s) 661, 807, 852, 1067, 1189, 1275, 1399
FauI CCCGC 2 cut(s) 982, 1211
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 2 cut(s) 987, 1185
FokI GGATG 3 cut(s) 100, 1100, 1382
Fsp4HI GCNGC 2 cut(s) 987, 1185
FspBI CTAG 2 cut(s) 1416, 1485
GlaI GCGC 1 cut(s) 787
GluI GCNGC 2 cut(s) 987, 1185
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 3 cut(s) 880, 1109, 1405
HapII CCGG 1 cut(s) 1213
HgaI GACGC 1 cut(s) 1460
HhaI GCGC 1 cut(s) 788
Hin1I GRCGYC 2 cut(s) 1139, 1452
Hin1II CATG 7 cut(s) 665, 811, 856, 1071, 1193, 1279, 1403
Hin6I GCGC 1 cut(s) 786
HinP1I GCGC 1 cut(s) 786
HindIII AAGCTT 2 cut(s) 202, 350
HinfI GANTC 6 cut(s) 319, 429, 544, 824, 930, 1361
HpaII CCGG 1 cut(s) 1213
HphI GGTGA 3 cut(s) 223, 292, 683
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 3 cut(s) 57, 912, 1431
Hpy188III TCNNGA 9 cut(s) 61, 331, 368, 397, 410, 497, 655, 975, 1282
Hpy8I GTNNAC 1 cut(s) 772
Hpy99I CGWCG 1 cut(s) 1361
HpyAV CCTTC 3 cut(s) 508, 698, 1043
HpyCH4III ACNGT 4 cut(s) 583, 1010, 1198, 1357
HpyCH4IV ACGT 1 cut(s) 1139
HpyCH4V TGCA 9 cut(s) 45, 473, 485, 606, 695, 1071, 1093, 1275, 1388
HpyF10VI GCNNNNNNNGC 6 cut(s) 210, 692, 792, 1184, 1239, 1248
HpyF3I CTNAG 4 cut(s) 843, 890, 1407, 1422
HpySE526I ACGT 1 cut(s) 1139
Hsp92I GRCGYC 2 cut(s) 1139, 1452
Hsp92II CATG 7 cut(s) 665, 811, 856, 1071, 1193, 1279, 1403
HspAI GCGC 1 cut(s) 786
Ksp22I TGATCA 1 cut(s) 673
Lsp1109I GCAGC 2 cut(s) 973, 1196
LweI GCATC 3 cut(s) 403, 682, 1349
MaeI CTAG 2 cut(s) 1416, 1485
MaeII ACGT 1 cut(s) 1139
MaeIII GTNAC 7 cut(s) 82, 280, 430, 1097, 1198, 1279, 1411
MboII GAAGA 6 cut(s) 766, 925, 934, 939, 1381, 1451
MfeI CAATTG 2 cut(s) 291, 435
MflI RGATCY 3 cut(s) 399, 1121, 1381
MhlI GDGCHC 1 cut(s) 1157
MlsI TGGCCA 1 cut(s) 880
MluNI TGGCCA 1 cut(s) 880
MlyI GAGTC 4 cut(s) 313, 438, 553, 833
MmeI TCCRAC 2 cut(s) 354, 614
Mox20I TGGCCA 1 cut(s) 880
MroXI GAANNNNTTC 1 cut(s) 518
MscI TGGCCA 1 cut(s) 880
MseI TTAA 6 cut(s) 27, 342, 405, 459, 572, 720
Msp20I TGGCCA 1 cut(s) 880
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 1 cut(s) 1213
MspR9I CCNGG 3 cut(s) 630, 711, 947
MunI CAATTG 2 cut(s) 291, 435
MvaI CCWGG 3 cut(s) 630, 711, 947
MwoI GCNNNNNNNGC 6 cut(s) 210, 692, 792, 1184, 1239, 1248
NcoI CCATGG 2 cut(s) 1189, 1399
NlaIII CATG 7 cut(s) 665, 811, 856, 1071, 1193, 1279, 1403
NlaIV GGNNCC 3 cut(s) 401, 745, 1354
NmuCI GTSAC 6 cut(s) 82, 280, 430, 1097, 1279, 1411
NspI RCATGY 2 cut(s) 665, 1071
PaeI GCATGC 1 cut(s) 1071
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 518
PfeI GAWTC 2 cut(s) 930, 1361
PflFI GACNNNGTC 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 945
PkrI GCNGC 2 cut(s) 988, 1186
PleI GAGTC 4 cut(s) 313, 437, 552, 832
PpsI GAGTC 4 cut(s) 313, 437, 552, 832
PpuMI RGGWCCY 1 cut(s) 707
Psp5II RGGWCCY 1 cut(s) 707
Psp6I CCWGG 3 cut(s) 628, 709, 945
PspEI GGTNACC 1 cut(s) 280
PspGI CCWGG 3 cut(s) 628, 709, 945
PspN4I GGNNCC 3 cut(s) 401, 745, 1354
PspPI GGNCC 4 cut(s) 707, 744, 1108, 1403
PspPPI RGGWCCY 1 cut(s) 707
PsrI GAACNNNNNNTAC 2 cut(s) 848, 880
PstI CTGCAG 1 cut(s) 608
PstNI CAGNNNCTG 1 cut(s) 1429
PsuI RGATCY 3 cut(s) 399, 1121, 1381
PsyI GACNNNGTC 1 cut(s) 428
RsaI GTAC 6 cut(s) 386, 464, 580, 680, 735, 1195
RsaNI GTAC 6 cut(s) 385, 463, 579, 679, 734, 1194
SaqAI TTAA 6 cut(s) 27, 342, 405, 459, 572, 720
SatI GCNGC 2 cut(s) 987, 1185
Sau96I GGNCC 4 cut(s) 707, 744, 1108, 1403
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 4 cut(s) 313, 438, 553, 833
ScrFI CCNGG 3 cut(s) 630, 711, 947
SduI GDGCHC 1 cut(s) 1157
SfaNI GCATC 3 cut(s) 403, 682, 1349
SfcI CTRYAG 1 cut(s) 604
SinI GGWCC 2 cut(s) 707, 744
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SphI GCATGC 1 cut(s) 1071
SsiI CCGC 2 cut(s) 989, 1204
SspMI CTAG 2 cut(s) 1416, 1485
StyD4I CCNGG 3 cut(s) 628, 709, 945
StyI CCWWGG 4 cut(s) 1111, 1189, 1377, 1399
TaaI ACNGT 4 cut(s) 583, 1010, 1198, 1357
TaiI ACGT 1 cut(s) 1142
TaqI TCGA 6 cut(s) 60, 267, 297, 1218, 1266, 1359
TatI WGTACW 2 cut(s) 384, 462
TfiI GAWTC 2 cut(s) 930, 1361
Tru1I TTAA 6 cut(s) 27, 342, 405, 459, 572, 720
Tru9I TTAA 6 cut(s) 27, 342, 405, 459, 572, 720
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 6 cut(s) 82, 280, 430, 1097, 1279, 1411
TseI GCWGC 2 cut(s) 986, 1184
Tsp45I GTSAC 6 cut(s) 82, 280, 430, 1097, 1279, 1411
TspDTI ATGAA 6 cut(s) 102, 327, 516, 869, 972, 1017
TspGWI ACGGA 4 cut(s) 52, 321, 577, 821
TspRI CASTG 1 cut(s) 865
Tth111I GACNNNGTC 1 cut(s) 428
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 2 cut(s) 707, 744
XapI RAATTY 3 cut(s) 149, 776, 1442
XceI RCATGY 2 cut(s) 665, 1071
XmnI GAANNNNTTC 1 cut(s) 518
XspI CTAG 2 cut(s) 1416, 1485
ZraI GACGTC 1 cut(s) 1140
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.