Prupe.4G124500_v2.0.a1

Belongs to the isocitrate and isopropylmalate dehydrogenases family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
6793458 .. 6797551
4094 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G124500.2

Sequence Viewer

Length: 1254 bp
ATGGAGTCATTCAACAAGATAAAGGTCACCAACCCGGTTGTCGAAATGGATGGAGATGAAATGACTCGAATTTTCTGGAAATCGATAAAAGATAAGCTTATCTTTCCCTTCCTGGAGTTGGATATCAAGTACTTTGACCTTGGCCTCCCTAATCGTGATGCCACCAATGATAAAGTCACAATTGAAAGTGCTGAAGCTACTCTTAAGTACAATGTTGCAATAAAGTGTGCAACTATAACTCCAGATGAGACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATACGGAACATTTTAAATGGTACTGTTTTTAGAGAACCAATTATCTGCAGAAATGTTCCCCGACTTGTTCCAGGTTGGACAAAGCCAATATGCATTGGGAGGCATGCTTTTGGTGACCAGTACCGAGCAACTGATGCAATCATAGAAGGACCTGGAAAACTTAAAATGGTTTTTGTACCTGATGGGCCCAATGAGAAGACAGAGTGGGAGGTTTACAACTTTACTGGTGCTGGAGGCATAGCTTTGTCCATGTATAACACGGATGAGTCTATCCGTGCTTTTGCTGAGGCTTCCATGAACACTGCCTATCAGAAAAAGTGGCCACTATATCTTAGCACTAAAAATACTATTCTGAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAGCTCATTGGAGATCCAGATTTGAGGCTGCAGGGATTTGGTATGAACACCGTCTTATTGATGATATGGTTGCTTATGCTCTCAAAAGTGAAGGAGGTTATGTTTGGGCATGCAAAAATTATGATGGGGATGTGCAAAGTGACTTCTTAGCCCAAGGCTTTGGATCTCTGGGGCTGATGACATCTATACTGGTGTGCCCAGATGGAAAGACCATTGAAGCTGAGGCAGCCCATGGTACAGTAACACGCCATTACCGAGTTCACCAAAAAGGAGGTGAAACCAGCACAAACAGCATAGCTTCTATCTTTGCTTGGTCCCGAGGTCTTGCACACAGGGCAAAGTTGGATGGCAATGACAGACTCTTGGATTATACGGAGAAGCTTGAAGCAGCCTGTGTTTCGACTGTCGAATCTGGGAAGATGACCAAGGATCTTGCACTCCTTATCCATGGGCCTAAGGTCACTAGGTCTAAGTATCTGAATACCGAAGAATTTATTGATGCTGTGGCTGAGGAGCTGAGAGTGAGATTGTTTAGCAGAGCAAAGTTGTAA

Protein Analysis

418

Amino Acids

47.25

Weight (kDa)

7.6

Isoelectric Point (pI)

26.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 711, 874, 1140
AcoI YGGCCR 1 cut(s) 623
AcsI RAATTY 2 cut(s) 69, 1193
AcuI CTGAAG 2 cut(s) 213, 677
AfaI GTAC 6 cut(s) 131, 209, 325, 425, 480, 940
AfiI CCNNNNNNNGG 1 cut(s) 118
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 7 cut(s) 13, 185, 268, 274, 679, 920, 1088
AjnI CCWGG 4 cut(s) 111, 373, 454, 690
AluBI AGCT 8 cut(s) 97, 197, 545, 707, 923, 1001, 1084, 1219
AluI AGCT 8 cut(s) 97, 197, 545, 707, 923, 1001, 1084, 1219
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 3 cut(s) 711, 874, 1140
Ama87I CYCGRG 1 cut(s) 1020
AoxI GGCC 4 cut(s) 142, 488, 623, 1154
ApaI GGGCCC 1 cut(s) 492
ApeKI GCWGC 3 cut(s) 731, 929, 1091
ApoI RAATTY 2 cut(s) 69, 1193
AspS9I GGNCC 5 cut(s) 452, 488, 489, 1017, 1154
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 4 cut(s) 19, 428, 956, 989
AvaI CYCGRG 1 cut(s) 1020
AvaII GGWCC 2 cut(s) 452, 1017
AxyI CCTNAGG 1 cut(s) 1158
BaeGI GKGCMC 2 cut(s) 492, 902
BalI TGGCCA 1 cut(s) 625
BanII GRGCYC 1 cut(s) 492
BauI CACGAG 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 506
BbvCI CCTCAGC 3 cut(s) 588, 924, 1212
BbvI GCAGC 3 cut(s) 718, 941, 1103
BccI CCATC 6 cut(s) 44, 479, 662, 821, 899, 1043
BciT130I CCWGG 4 cut(s) 113, 375, 456, 692
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 1167
BfmI CTRYAG 2 cut(s) 349, 732
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 3 cut(s) 732, 930, 1092
BlsI GCNGC 3 cut(s) 733, 931, 1093
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 5 cut(s) 35, 113, 375, 456, 692
Bme18I GGWCC 2 cut(s) 452, 1017
BmeT110I CYCGRG 1 cut(s) 1020
BmgT120I GGNCC 5 cut(s) 452, 488, 489, 1017, 1154
BmiI GGNNCC 2 cut(s) 490, 1019
BmrFI CCNGG 5 cut(s) 35, 113, 375, 456, 692
BmsI GCATC 3 cut(s) 148, 427, 1192
BpiI GAAGAC 1 cut(s) 506
BpmI CTGGAG 3 cut(s) 134, 225, 555
Bpu10I CCTNAGC 3 cut(s) 588, 924, 1212
BpuMI CCSGG 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 83
BsaJI CCNNGG 6 cut(s) 139, 856, 934, 1021, 1128, 1150
BsaXI ACNNNNNCTCC 4 cut(s) 223, 253, 789, 819
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 3 cut(s) 421, 532, 897
Bse21I CCTNAGG 1 cut(s) 1158
Bse3DI GCAATG 1 cut(s) 1060
BseBI CCWGG 4 cut(s) 113, 375, 456, 692
BseCI ATCGAT 1 cut(s) 83
BseDI CCNNGG 6 cut(s) 139, 856, 934, 1021, 1128, 1150
BseGI GGATG 4 cut(s) 55, 571, 838, 1054
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 1060
BseMII CTCAG 4 cut(s) 579, 915, 1203, 1211
BseNI ACTGG 3 cut(s) 421, 532, 897
BseRI GAGGAG 2 cut(s) 301, 1229
BseSI GKGCMC 2 cut(s) 492, 902
BseXI GCAGC 3 cut(s) 718, 941, 1103
BshFI GGCC 4 cut(s) 144, 490, 625, 1156
BshVI ATCGAT 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 1020
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 2 cut(s) 313, 1003
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 2 cut(s) 313, 1003
BsnI GGCC 4 cut(s) 144, 490, 625, 1156
BsoBI CYCGRG 1 cut(s) 1020
Bsp120I GGGCCC 1 cut(s) 488
Bsp1286I GDGCHC 2 cut(s) 492, 902
Bsp143I GATC 3 cut(s) 716, 866, 1132
Bsp19I CCATGG 2 cut(s) 934, 1150
BspANI GGCC 4 cut(s) 144, 490, 625, 1156
BspCNI CTCAG 4 cut(s) 580, 916, 1204, 1212
BspDI ATCGAT 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 490, 1019
BspMAI CTGCAG 2 cut(s) 353, 736
BspPI GGATC 3 cut(s) 711, 874, 1140
BspTI CTTAAG 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 1060
BsrI ACTGG 3 cut(s) 421, 532, 897
BssECI CCNNGG 6 cut(s) 139, 856, 934, 1021, 1128, 1150
BssMI GATC 3 cut(s) 716, 866, 1132
BssSI CACGAG 1 cut(s) 252
BssT1I CCWWGG 5 cut(s) 139, 856, 934, 1128, 1150
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 4 cut(s) 113, 375, 456, 692
Bst4CI ACNGT 4 cut(s) 328, 755, 943, 1108
BstAFI CTTAAG 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 408, 814
BstDEI CTNAG 8 cut(s) 588, 635, 850, 924, 1158, 1173, 1212, 1220
BstDSI CCRYGG 2 cut(s) 934, 1150
BstEII GGTNACC 2 cut(s) 25, 416
BstF5I GGATG 4 cut(s) 55, 571, 838, 1054
BstKTI GATC 3 cut(s) 719, 869, 1135
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 716, 866, 1132
BstMWI GCNNNNNNNGC 4 cut(s) 437, 929, 993, 1037
BstNI CCWGG 4 cut(s) 113, 375, 456, 692
BstNSI RCATGY 2 cut(s) 410, 816
BstPI GGTNACC 2 cut(s) 25, 416
BstSCI CCNGG 5 cut(s) 33, 111, 373, 454, 690
BstSFI CTRYAG 2 cut(s) 349, 732
BstSLI GKGCMC 2 cut(s) 492, 902
BstV1I GCAGC 3 cut(s) 718, 941, 1103
BstV2I GAAGAC 1 cut(s) 506
BstX2I RGATCY 3 cut(s) 716, 866, 1132
BstXI CCANNNNNNTGG 1 cut(s) 863
BstYI RGATCY 3 cut(s) 716, 866, 1132
Bsu15I ATCGAT 1 cut(s) 83
Bsu36I CCTNAGG 1 cut(s) 1158
BsuRI GGCC 4 cut(s) 144, 490, 625, 1156
BsuTUI ATCGAT 1 cut(s) 83
BtgI CCRYGG 2 cut(s) 934, 1150
BtsCI GGATG 4 cut(s) 55, 571, 838, 1054
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 1 cut(s) 603
Cac8I GCNNGC 2 cut(s) 408, 814
Cfr13I GGNCC 5 cut(s) 452, 488, 489, 1017, 1154
ClaI ATCGAT 1 cut(s) 83
Csp6I GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
CviAII CATG 6 cut(s) 407, 553, 598, 813, 935, 1151
CviQI GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
DdeI CTNAG 8 cut(s) 588, 635, 850, 924, 1158, 1173, 1212, 1220
DpnI GATC 3 cut(s) 718, 868, 1134
DpnII GATC 3 cut(s) 716, 866, 1132
DraI TTTAAA 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 623
Eco130I CCWWGG 5 cut(s) 139, 856, 934, 1128, 1150
Eco24I GRGCYC 1 cut(s) 492
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 2 cut(s) 452, 1017
Eco57I CTGAAG 2 cut(s) 213, 677
Eco81I CCTNAGG 1 cut(s) 1158
Eco88I CYCGRG 1 cut(s) 1020
Eco91I GGTNACC 2 cut(s) 25, 416
EcoO109I RGGNCCY 1 cut(s) 452
EcoO65I GGTNACC 2 cut(s) 25, 416
EcoRII CCWGG 4 cut(s) 111, 373, 454, 690
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 5 cut(s) 139, 856, 934, 1128, 1150
EcoT22I ATGCAT 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 5 cut(s) 139, 856, 934, 1128, 1150
FaeI CATG 6 cut(s) 410, 556, 601, 816, 938, 1154
FalI AAGNNNNNCTT 8 cut(s) 81, 113, 86, 118, 186, 218, 671, 703
FaqI GGGAC 2 cut(s) 313, 1003
FatI CATG 6 cut(s) 406, 552, 597, 812, 934, 1150
Fnu4HI GCNGC 3 cut(s) 732, 930, 1092
FokI GGATG 4 cut(s) 62, 578, 845, 1061
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 3 cut(s) 732, 930, 1092
FspBI CTAG 1 cut(s) 1167
GluI GCNGC 3 cut(s) 732, 930, 1092
GsuI CTGGAG 3 cut(s) 134, 225, 555
HaeIII GGCC 4 cut(s) 144, 490, 625, 1156
HapII CCGG 1 cut(s) 35
Hin1II CATG 6 cut(s) 410, 556, 601, 816, 938, 1154
HindIII AAGCTT 2 cut(s) 95, 1082
HinfI GANTC 8 cut(s) 5, 64, 250, 289, 569, 675, 1062, 1112
HpaII CCGG 1 cut(s) 35
HphI GGTGA 4 cut(s) 19, 428, 956, 989
Hpy166II GTNNAC 2 cut(s) 517, 964
Hpy188I TCNGA 3 cut(s) 615, 657, 1182
Hpy188III TCNNGA 5 cut(s) 76, 155, 242, 720, 1020
Hpy8I GTNNAC 2 cut(s) 517, 964
HpyAV CCTTC 3 cut(s) 118, 443, 788
HpyCH4III ACNGT 4 cut(s) 328, 755, 943, 1108
HpyF10VI GCNNNNNNNGC 4 cut(s) 437, 929, 993, 1037
HpyF3I CTNAG 8 cut(s) 588, 635, 850, 924, 1158, 1173, 1212, 1220
Hsp92II CATG 6 cut(s) 410, 556, 601, 816, 938, 1154
Kzo9I GATC 3 cut(s) 716, 866, 1132
LmnI GCTCC 1 cut(s) 1216
Lsp1109I GCAGC 3 cut(s) 718, 941, 1103
LweI GCATC 3 cut(s) 148, 427, 1192
MaeI CTAG 1 cut(s) 1167
MaeIII GTNAC 6 cut(s) 25, 175, 416, 842, 943, 1162
MalI GATC 3 cut(s) 718, 868, 1134
MboI GATC 3 cut(s) 716, 866, 1132
MboII GAAGA 6 cut(s) 511, 670, 679, 684, 1132, 1202
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 3 cut(s) 716, 866, 1132
MhlI GDGCHC 2 cut(s) 492, 902
MlsI TGGCCA 1 cut(s) 625
MluCI AATT 5 cut(s) 69, 180, 342, 820, 1193
MluNI TGGCCA 1 cut(s) 625
MlyI GAGTC 6 cut(s) 14, 58, 244, 298, 578, 1056
MmeI TCCRAC 3 cut(s) 99, 359, 1026
Mox20I TGGCCA 1 cut(s) 625
Mph1103I ATGCAT 1 cut(s) 398
MscI TGGCCA 1 cut(s) 625
MseI TTAA 4 cut(s) 204, 258, 317, 465
Msp20I TGGCCA 1 cut(s) 625
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 5 cut(s) 35, 113, 375, 456, 692
MunI CAATTG 1 cut(s) 180
MvaI CCWGG 4 cut(s) 113, 375, 456, 692
MwoI GCNNNNNNNGC 4 cut(s) 437, 929, 993, 1037
NciI CCSGG 1 cut(s) 35
NcoI CCATGG 2 cut(s) 934, 1150
NdeII GATC 3 cut(s) 716, 866, 1132
NlaIII CATG 6 cut(s) 410, 556, 601, 816, 938, 1154
NlaIV GGNNCC 2 cut(s) 490, 1019
NmuCI GTSAC 5 cut(s) 25, 175, 416, 842, 1162
NsiI ATGCAT 1 cut(s) 398
NspI RCATGY 2 cut(s) 410, 816
PaeI GCATGC 2 cut(s) 410, 816
PcsI WCGNNNNNNNCGW 1 cut(s) 955
PfeI GAWTC 2 cut(s) 675, 1112
PfoI TCCNGGA 2 cut(s) 111, 690
PkrI GCNGC 3 cut(s) 733, 931, 1093
PleI GAGTC 6 cut(s) 13, 58, 244, 297, 577, 1056
PpsI GAGTC 6 cut(s) 13, 58, 244, 297, 577, 1056
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 4 cut(s) 111, 373, 454, 690
PspEI GGTNACC 2 cut(s) 25, 416
PspGI CCWGG 4 cut(s) 111, 373, 454, 690
PspN4I GGNNCC 2 cut(s) 490, 1019
PspOMI GGGCCC 1 cut(s) 488
PspPI GGNCC 5 cut(s) 452, 488, 489, 1017, 1154
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 2 cut(s) 353, 736
PsuI RGATCY 3 cut(s) 716, 866, 1132
RsaI GTAC 6 cut(s) 131, 209, 325, 425, 480, 940
RsaNI GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
SaqAI TTAA 4 cut(s) 204, 258, 317, 465
SatI GCNGC 3 cut(s) 732, 930, 1092
Sau3AI GATC 3 cut(s) 716, 866, 1132
Sau96I GGNCC 5 cut(s) 452, 488, 489, 1017, 1154
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 6 cut(s) 14, 58, 244, 298, 578, 1056
ScrFI CCNGG 5 cut(s) 35, 113, 375, 456, 692
SduI GDGCHC 2 cut(s) 492, 902
SfaNI GCATC 3 cut(s) 148, 427, 1192
SfcI CTRYAG 2 cut(s) 349, 732
SinI GGWCC 2 cut(s) 452, 1017
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SphI GCATGC 2 cut(s) 410, 816
Sse9I AATT 5 cut(s) 69, 180, 342, 820, 1193
SspMI CTAG 1 cut(s) 1167
StyD4I CCNGG 5 cut(s) 33, 111, 373, 454, 690
StyI CCWWGG 5 cut(s) 139, 856, 934, 1128, 1150
TaaI ACNGT 4 cut(s) 328, 755, 943, 1108
TaqI TCGA 5 cut(s) 42, 67, 83, 1103, 1110
TasI AATT 5 cut(s) 69, 180, 342, 820, 1193
TatI WGTACW 2 cut(s) 129, 207
TfiI GAWTC 2 cut(s) 675, 1112
Tru1I TTAA 4 cut(s) 204, 258, 317, 465
Tru9I TTAA 4 cut(s) 204, 258, 317, 465
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 5 cut(s) 25, 175, 416, 842, 1162
TseI GCWGC 3 cut(s) 731, 929, 1091
Tsp45I GTSAC 5 cut(s) 25, 175, 416, 842, 1162
TspDTI ATGAA 4 cut(s) 72, 614, 717, 762
TspGWI ACGGA 4 cut(s) 322, 566, 578, 1091
TspRI CASTG 1 cut(s) 610
Vha464I CTTAAG 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 452, 1017
XapI RAATTY 2 cut(s) 69, 1193
XceI RCATGY 2 cut(s) 410, 816
XspI CTAG 1 cut(s) 1167
ZrmI AGTACT 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.