Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

29503150 .. 29509489

Gene Structure 6340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTCTTCTCCGACTATTCGTCGAATCGGAAGCACGTGGATTTGGGGGGACGGAGTATGAAGGATATGGCCGCCAACCGCGCTGCCCTAATTTTGCCCTTTCTGGAACTGGATATCAAGTACTTTGATCTTGGCCTCCCTAATCGTGATGCCACCAATGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTAGCAATCAAGTGTGCAACTACAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTACAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACGAGGCCAATATGCATTGGGAGGCATGCTTTCGGTGATCAGTACCGAGCAACTGATGCAATCATAAAAGGACCTGGGAAACTTAAATTAGTATTTGTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGATTTTCAACTTTACTGGCATAAATGAGTTGCAAGAAGGTTTTGTTGAAGCGAAAATGGCACTAACTAGTTGCAAAAATGGCACTAACCAGTTCCACCTTTTTAAGCAGGGGTTTCTGAATCCAAATGAAGTTCACATTTTCGGCTATGCAAGGACTAAGATTTCTTATGATGAGCTAAGAAGCCGCATACGTGGATATCTCATCCAAGGAGCTTCGTCCAAGGACTTGGATGATGTAACCAAATTTTTGCAACTGCTCGCTGTAGCTCATTTTGTCCACCAGTTTCCTTCACCAACTCAAATGCTGTGGATTGTTGAGAGCAACATGCAACCGTCTGTACTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

283

Amino Acids

32.22

Weight (kDa)

9.02

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	30 - 149	8.4e-18	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	4 cut(s)	72, 79, 355, 688
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	746
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	6 cut(s)	122, 200, 316, 416, 471, 843
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	176, 259, 265, 511, 551
AhdI	GACNNNNNGTC	1 cut(s)	19
AhlI	ACTAGT	2 cut(s)	569, 844
AjnI	CCWGG	2 cut(s)	364, 445
AluBI	AGCT	4 cut(s)	188, 679, 716, 770
AluI	AGCT	4 cut(s)	188, 679, 716, 770
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	3 cut(s)	69, 133, 377
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	443, 480
AsuHPI	GGTGA	2 cut(s)	419, 786
AvaII	GGWCC	2 cut(s)	443, 480
BauI	CACGAG	1 cut(s)	243
BbrPI	CACGTG	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	2 cut(s)	366, 447
BclI	TGATCA	1 cut(s)	409
BcuI	ACTAGT	2 cut(s)	569, 844
BfaI	CTAG	2 cut(s)	570, 845
BfmI	CTRYAG	2 cut(s)	340, 765
BfrI	CTTAAG	1 cut(s)	194
BisI	GCNGC	3 cut(s)	72, 84, 688
BlsI	GCNGC	3 cut(s)	73, 85, 689
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	366, 447
Bme18I	GGWCC	2 cut(s)	443, 480
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	443, 480
BmiI	GGNNCC	1 cut(s)	481
BmrFI	CCNGG	2 cut(s)	366, 447
BmsI	GCATC	2 cut(s)	139, 418
BsaAI	YACGTR	2 cut(s)	37, 695
BsaJI	CCNNGG	3 cut(s)	446, 709, 723
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bse1I	ACTGG	4 cut(s)	114, 523, 592, 784
BseAI	TCCGGA	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	366, 447
BseDI	CCNNGG	3 cut(s)	446, 709, 723
BseGI	GGATG	2 cut(s)	705, 739
BseNI	ACTGG	4 cut(s)	114, 523, 592, 784
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	71, 135, 379
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	2 cut(s)	63, 304
BsmFI	GGGAC	2 cut(s)	63, 304
BsnI	GGCC	3 cut(s)	71, 135, 379
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	127, 409
BspACI	CCGC	4 cut(s)	72, 79, 355, 688
BspANI	GGCC	3 cut(s)	71, 135, 379
BspEI	TCCGGA	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	481
BspTI	CTTAAG	1 cut(s)	194
BsrI	ACTGG	4 cut(s)	114, 523, 592, 784
BssECI	CCNNGG	3 cut(s)	446, 709, 723
BssMI	GATC	2 cut(s)	127, 409
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	709, 723
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	366, 447
Bst4CI	ACNGT	2 cut(s)	319, 837
BstAFI	CTTAAG	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstBAI	YACGTR	2 cut(s)	37, 695
BstC8I	GCNNGC	2 cut(s)	399, 762
BstDEI	CTNAG	2 cut(s)	660, 680
BstF5I	GGATG	2 cut(s)	705, 739
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	2 cut(s)	130, 412
BstMBI	GATC	2 cut(s)	127, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 428, 560, 582
BstNI	CCWGG	2 cut(s)	366, 447
BstNSI	RCATGY	2 cut(s)	401, 832
BstSCI	CCNGG	2 cut(s)	364, 445
BstSFI	CTRYAG	2 cut(s)	340, 765
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	730
BsuRI	GGCC	3 cut(s)	71, 135, 379
BtsCI	GGATG	2 cut(s)	705, 739
Cac8I	GCNNGC	2 cut(s)	399, 762
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	443, 480
Csp6I	GTAC	6 cut(s)	121, 199, 315, 415, 470, 842
CspCI	CAANNNNNGTGG	2 cut(s)	791, 826
CviAII	CATG	2 cut(s)	398, 829
CviJI	RGCY	9 cut(s)	71, 135, 188, 379, 648, 679, 687, 716, 770
CviKI_1	RGCY	9 cut(s)	71, 135, 188, 379, 648, 679, 687, 716, 770
CviQI	GTAC	6 cut(s)	121, 199, 315, 415, 470, 842
DdeI	CTNAG	2 cut(s)	660, 680
DpnI	GATC	2 cut(s)	129, 411
DpnII	GATC	2 cut(s)	127, 409
DraI	TTTAAA	1 cut(s)	309
DriI	GACNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	709, 723
Eco32I	GATATC	2 cut(s)	115, 701
Eco47I	GGWCC	2 cut(s)	443, 480
Eco72I	CACGTG	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	364, 445
EcoRV	GATATC	2 cut(s)	115, 701
EcoT14I	CCWWGG	2 cut(s)	709, 723
EcoT22I	ATGCAT	1 cut(s)	389
ErhI	CCWWGG	2 cut(s)	709, 723
FaeI	CATG	2 cut(s)	401, 832
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	2 cut(s)	63, 304
FatI	CATG	2 cut(s)	397, 828
FauI	CCCGC	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	72, 84, 688
FokI	GGATG	2 cut(s)	692, 746
Fsp4HI	GCNGC	3 cut(s)	72, 84, 688
FspBI	CTAG	2 cut(s)	570, 845
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	3 cut(s)	72, 84, 688
HaeIII	GGCC	3 cut(s)	71, 135, 379
HapII	CCGG	1 cut(s)	298
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	401, 832
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	4 cut(s)	25, 165, 280, 622
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	2 cut(s)	419, 786
Hpy166II	GTNNAC	2 cut(s)	637, 781
Hpy188I	TCNGA	3 cut(s)	13, 30, 621
Hpy188III	TCNNGA	4 cut(s)	104, 146, 233, 298
Hpy8I	GTNNAC	2 cut(s)	637, 781
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	55, 533, 801
HpyCH4III	ACNGT	2 cut(s)	319, 837
HpyCH4IV	ACGT	2 cut(s)	36, 694
HpyCH4V	TGCA	9 cut(s)	182, 221, 387, 431, 535, 576, 653, 754, 832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 428, 560, 582
HpyF3I	CTNAG	2 cut(s)	660, 680
HpySE526I	ACGT	2 cut(s)	36, 694
Hsp92II	CATG	2 cut(s)	401, 832
HspAI	GCGC	1 cut(s)	81
Kpn2I	TCCGGA	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	127, 409
LmnI	GCTCC	1 cut(s)	713
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	139, 418
MaeI	CTAG	2 cut(s)	570, 845
MaeII	ACGT	2 cut(s)	36, 694
MaeIII	GTNAC	2 cut(s)	166, 739
MalI	GATC	2 cut(s)	129, 411
MboI	GATC	2 cut(s)	127, 409
MfeI	CAATTG	1 cut(s)	171
MluCI	AATT	4 cut(s)	90, 171, 458, 746
MlyI	GAGTC	2 cut(s)	174, 289
MmeI	TCCRAC	2 cut(s)	36, 350
MnlI	CCTC	4 cut(s)	146, 270, 369, 387
Mph1103I	ATGCAT	1 cut(s)	389
MroI	TCCGGA	1 cut(s)	297
MseI	TTAA	6 cut(s)	195, 249, 308, 456, 606, 850
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	366, 447
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	2 cut(s)	366, 447
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	80, 428, 560, 582
NdeII	GATC	2 cut(s)	127, 409
NlaIII	CATG	2 cut(s)	401, 832
NlaIV	GGNNCC	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	389
NspI	RCATGY	2 cut(s)	401, 832
PaeI	GCATGC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	25, 622
PkrI	GCNGC	3 cut(s)	73, 85, 689
PleI	GAGTC	2 cut(s)	173, 288
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	2 cut(s)	173, 288
Ppu21I	YACGTR	2 cut(s)	37, 695
PpuMI	RGGWCCY	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	364, 445
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	2 cut(s)	364, 445
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	2 cut(s)	443, 480
PspPPI	RGGWCCY	1 cut(s)	443
RsaI	GTAC	6 cut(s)	122, 200, 316, 416, 471, 843
RsaNI	GTAC	6 cut(s)	121, 199, 315, 415, 470, 842
SaqAI	TTAA	6 cut(s)	195, 249, 308, 456, 606, 850
SatI	GCNGC	3 cut(s)	72, 84, 688
Sau3AI	GATC	2 cut(s)	127, 409
Sau96I	GGNCC	2 cut(s)	443, 480
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	2 cut(s)	174, 289
ScrFI	CCNGG	2 cut(s)	366, 447
SfaNI	GCATC	2 cut(s)	139, 418
SfcI	CTRYAG	2 cut(s)	340, 765
SinI	GGWCC	2 cut(s)	443, 480
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SpeI	ACTAGT	2 cut(s)	569, 844
SphI	GCATGC	1 cut(s)	401
Sse9I	AATT	4 cut(s)	90, 171, 458, 746
SsiI	CCGC	4 cut(s)	72, 79, 355, 688
SspMI	CTAG	2 cut(s)	570, 845
StyD4I	CCNGG	2 cut(s)	364, 445
StyI	CCWWGG	2 cut(s)	709, 723
TaaI	ACNGT	2 cut(s)	319, 837
TaiI	ACGT	2 cut(s)	39, 697
TaqI	TCGA	1 cut(s)	23
TasI	AATT	4 cut(s)	90, 171, 458, 746
TatI	WGTACW	3 cut(s)	120, 198, 841
TauI	GCSGC	2 cut(s)	74, 690
TfiI	GAWTC	2 cut(s)	25, 622
Tru1I	TTAA	6 cut(s)	195, 249, 308, 456, 606, 850
Tru9I	TTAA	6 cut(s)	195, 249, 308, 456, 606, 850
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	74, 252, 645
TspGWI	ACGGA	1 cut(s)	67
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	443, 480
XapI	RAATTY	1 cut(s)	746
XceI	RCATGY	2 cut(s)	401, 832
XspI	CTAG	2 cut(s)	570, 845
ZrmI	AGTACT	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.