Rh5BG161400

Belongs to the isocitrate and isopropylmalate dehydrogenases family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
16819863 .. 16823904
4042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG161400.1

Sequence Viewer

Length: 1254 bp
ATGGAGGCATTCAATAAGATCAAGGTGAACAACCCAATTGTCGAAATGGATGGAGATGAAATGACTCGAATTTTCTGGAAATCTATAAAAGATAAGCTTATTTTTCCCTTTCTGGAACTGGATATCAAGTACTTTGACCTTGGCCTCCCTAATCGTGATGCCACCAGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTTTCTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACAAAGCCAATATGCATTGGGAGGCATGCCTTTGGTGATCAGTACCGAGCAACTGATGCAATCATAAAAGGACCCGGGAAACTTAAATTAGTTTTTGTACCTGATGGGTCCAATGAGAAGCAAGAATTTGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGACGCATCTATGAACACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCTGAAGGGATTTGGTATGAACACCGTCTTATTGACGATATGGTTGCATATGCTCTTAAAAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTATGATGGGGATGTGCAAAGTGACTTAGTAGCACAAGGTTTTGGATCTCTGGGTCTGATGACATCTATACTGGTGTGCCCAGATGGAAAGACCATTGAAGCTGAAGCAGCCCATGGTACAGTTACCCGCCATTACCGGGTTCACCAAAAAGGAGGTGAAACCAGCACAAACAGCATAGCTTCTATCTTTGCTTGGTCACGAGGTCTTGCACACAGGGCAAAGTTGGATAGCAATGCCAGGCTCTTGGACTTTGTGGAGAAACTTGAAGCAGCTTGTGTTGGAACTGTTGAATCTGGGAAGATGACCAAGGATCTTGCTCTCCTTATCCATGGGCCTAAGGTCCGTAGGTCTCAGTATCTCAATACTGAAGAATTTATTGATGCTGTGGCTGAGGAGCTGAGAGTTAGATTGTTTAGTAGAGCAAAGTTGTAA

Protein Analysis

417

Amino Acids

47.26

Weight (kDa)

8.35

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 8 - 403 9.3e-79 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 306
AciI CCGC 3 cut(s) 364, 587, 949
AclWI GGATC 4 cut(s) 573, 711, 874, 1140
AcoI YGGCCR 1 cut(s) 623
AcsI RAATTY 3 cut(s) 69, 506, 1193
AcuI CTGAAG 3 cut(s) 753, 945, 1209
AfaI GTAC 6 cut(s) 131, 209, 325, 425, 480, 940
AfiI CCNNNNNNNGG 1 cut(s) 958
AflII CTTAAG 1 cut(s) 203
AjnI CCWGG 3 cut(s) 373, 690, 1058
AluBI AGCT 8 cut(s) 97, 197, 545, 731, 923, 1001, 1094, 1219
AluI AGCT 8 cut(s) 97, 197, 545, 731, 923, 1001, 1094, 1219
Alw26I GTCTC 1 cut(s) 1176
AlwI GGATC 4 cut(s) 573, 711, 874, 1140
Ama87I CYCGRG 1 cut(s) 455
Aor13HI TCCGGA 1 cut(s) 306
AoxI GGCC 3 cut(s) 142, 623, 1154
ApeKI GCWGC 2 cut(s) 929, 1091
ApoI RAATTY 3 cut(s) 69, 506, 1193
AspS9I GGNCC 4 cut(s) 452, 489, 1154, 1162
AsuC2I CCSGG 3 cut(s) 456, 457, 959
AsuHPI GGTGA 4 cut(s) 37, 428, 956, 989
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 3 cut(s) 452, 489, 1162
AxyI CCTNAGG 1 cut(s) 1158
BaeGI GKGCMC 1 cut(s) 902
BalI TGGCCA 1 cut(s) 625
BauI CACGAG 2 cut(s) 252, 1020
BbvCI CCTCAGC 1 cut(s) 1212
BbvI GCAGC 2 cut(s) 941, 1103
BccI CCATC 5 cut(s) 44, 479, 662, 821, 899
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BciT130I CCWGG 3 cut(s) 375, 692, 1060
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 3 cut(s) 456, 457, 959
BcoDI GTCTC 1 cut(s) 1176
BfmI CTRYAG 1 cut(s) 349
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 2 cut(s) 930, 1092
BlsI GCNGC 2 cut(s) 931, 1093
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 6 cut(s) 375, 456, 457, 692, 959, 1060
Bme18I GGWCC 3 cut(s) 452, 489, 1162
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 4 cut(s) 452, 489, 1154, 1162
BmiI GGNNCC 2 cut(s) 454, 490
BmrFI CCNGG 6 cut(s) 375, 456, 457, 692, 959, 1060
BmsI GCATC 4 cut(s) 148, 427, 602, 1192
BpmI CTGGAG 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 1212
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 3 cut(s) 456, 457, 959
BsaI GGTCTC 1 cut(s) 1176
BsaJI CCNNGG 5 cut(s) 139, 455, 934, 1128, 1150
BsaWI WCCGGW 1 cut(s) 306
BsaXI ACNNNNNCTCC 4 cut(s) 223, 253, 789, 819
Bsc4I CCNNNNNNNGG 1 cut(s) 958
Bse1I ACTGG 4 cut(s) 123, 165, 532, 897
Bse21I CCTNAGG 1 cut(s) 1158
Bse3DI GCAATG 1 cut(s) 1060
BseAI TCCGGA 1 cut(s) 306
BseBI CCWGG 3 cut(s) 375, 692, 1060
BseDI CCNNGG 5 cut(s) 139, 455, 934, 1128, 1150
BseGI GGATG 2 cut(s) 55, 838
BseLI CCNNNNNNNGG 1 cut(s) 958
BseMI GCAATG 1 cut(s) 1060
BseMII CTCAG 3 cut(s) 1187, 1203, 1211
BseNI ACTGG 4 cut(s) 123, 165, 532, 897
BseRI GAGGAG 2 cut(s) 301, 1229
BseSI GKGCMC 1 cut(s) 902
BseXI GCAGC 2 cut(s) 941, 1103
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 3 cut(s) 144, 625, 1156
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 3 cut(s) 307, 456, 958
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 958
BsmAI GTCTC 1 cut(s) 1176
BsmFI GGGAC 1 cut(s) 313
BsmI GAATGC 1 cut(s) 8
BsnI GGCC 3 cut(s) 144, 625, 1156
Bso31I GGTCTC 1 cut(s) 1176
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 902
Bsp13I TCCGGA 1 cut(s) 306
Bsp143I GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
Bsp19I CCATGG 2 cut(s) 934, 1150
BspACI CCGC 3 cut(s) 364, 587, 949
BspANI GGCC 3 cut(s) 144, 625, 1156
BspCNI CTCAG 3 cut(s) 1186, 1204, 1212
BspEI TCCGGA 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 454, 490
BspMAI CTGCAG 1 cut(s) 353
BspPI GGATC 4 cut(s) 573, 711, 874, 1140
BspTI CTTAAG 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 1176
BsrDI GCAATG 1 cut(s) 1060
BsrI ACTGG 4 cut(s) 123, 165, 532, 897
BssECI CCNNGG 5 cut(s) 139, 455, 934, 1128, 1150
BssMI GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
BssSI CACGAG 2 cut(s) 252, 1020
BssT1I CCWWGG 4 cut(s) 139, 934, 1128, 1150
Bst2BI CACGAG 2 cut(s) 252, 1020
Bst2UI CCWGG 3 cut(s) 375, 692, 1060
Bst4CI ACNGT 4 cut(s) 328, 755, 943, 1108
BstAFI CTTAAG 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 408, 814
BstDEI CTNAG 6 cut(s) 635, 847, 1158, 1173, 1212, 1220
BstDSI CCRYGG 2 cut(s) 934, 1150
BstF5I GGATG 2 cut(s) 55, 838
BstKTI GATC 6 cut(s) 21, 421, 581, 719, 869, 1135
BstMAI GTCTC 1 cut(s) 1176
BstMBI GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
BstMWI GCNNNNNNNGC 4 cut(s) 437, 929, 993, 1037
BstNI CCWGG 3 cut(s) 375, 692, 1060
BstNSI RCATGY 2 cut(s) 410, 816
BstSCI CCNGG 6 cut(s) 373, 454, 455, 690, 957, 1058
BstSFI CTRYAG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 902
BstV1I GCAGC 2 cut(s) 941, 1103
BstX2I RGATCY 3 cut(s) 716, 866, 1132
BstXI CCANNNNNNTGG 1 cut(s) 1066
BstYI RGATCY 3 cut(s) 716, 866, 1132
Bsu36I CCTNAGG 1 cut(s) 1158
BsuRI GGCC 3 cut(s) 144, 625, 1156
BtgI CCRYGG 2 cut(s) 934, 1150
BtsCI GGATG 2 cut(s) 55, 838
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 3 cut(s) 172, 561, 603
Cac8I GCNNGC 2 cut(s) 408, 814
Cfr13I GGNCC 4 cut(s) 452, 489, 1154, 1162
Cfr9I CCCGGG 1 cut(s) 455
CseI GACGC 1 cut(s) 599
Csp6I GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
CviAII CATG 4 cut(s) 407, 813, 935, 1151
CviQI GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
DdeI CTNAG 6 cut(s) 635, 847, 1158, 1173, 1212, 1220
DpnI GATC 6 cut(s) 20, 420, 580, 718, 868, 1134
DpnII GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
DraI TTTAAA 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 623
Eco130I CCWWGG 4 cut(s) 139, 934, 1128, 1150
Eco31I GGTCTC 1 cut(s) 1176
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 3 cut(s) 452, 489, 1162
Eco57I CTGAAG 3 cut(s) 753, 945, 1209
Eco81I CCTNAGG 1 cut(s) 1158
Eco88I CYCGRG 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 3 cut(s) 373, 690, 1058
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 4 cut(s) 139, 934, 1128, 1150
EcoT22I ATGCAT 1 cut(s) 398
ErhI CCWWGG 4 cut(s) 139, 934, 1128, 1150
FaeI CATG 4 cut(s) 410, 816, 938, 1154
FalI AAGNNNNNCTT 6 cut(s) 81, 113, 186, 218, 671, 703
FaqI GGGAC 1 cut(s) 313
FatI CATG 4 cut(s) 406, 812, 934, 1150
FauI CCCGC 2 cut(s) 371, 956
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 930, 1092
FokI GGATG 2 cut(s) 62, 845
Fsp4HI GCNGC 2 cut(s) 930, 1092
GluI GCNGC 2 cut(s) 930, 1092
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 3 cut(s) 144, 625, 1156
HapII CCGG 3 cut(s) 307, 456, 958
HgaI GACGC 1 cut(s) 599
Hin1II CATG 4 cut(s) 410, 816, 938, 1154
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 6 cut(s) 64, 174, 289, 569, 675, 1112
HpaII CCGG 3 cut(s) 307, 456, 958
HphI GGTGA 4 cut(s) 37, 428, 956, 989
Hpy166II GTNNAC 2 cut(s) 28, 964
Hpy188I TCNGA 2 cut(s) 578, 879
Hpy188III TCNNGA 8 cut(s) 76, 113, 155, 242, 307, 658, 720, 1020
Hpy8I GTNNAC 2 cut(s) 28, 964
HpyAV CCTTC 2 cut(s) 728, 788
HpyCH4III ACNGT 4 cut(s) 328, 755, 943, 1108
HpyCH4V TGCA 9 cut(s) 191, 230, 351, 396, 440, 776, 816, 838, 1031
HpyF10VI GCNNNNNNNGC 4 cut(s) 437, 929, 993, 1037
HpyF3I CTNAG 6 cut(s) 635, 847, 1158, 1173, 1212, 1220
Hsp92II CATG 4 cut(s) 410, 816, 938, 1154
Kpn2I TCCGGA 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
LmnI GCTCC 1 cut(s) 1216
Lsp1109I GCAGC 2 cut(s) 941, 1103
LweI GCATC 4 cut(s) 148, 427, 602, 1192
MaeIII GTNAC 4 cut(s) 175, 842, 943, 1017
MalI GATC 6 cut(s) 20, 420, 580, 718, 868, 1134
MboI GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
MboII GAAGA 4 cut(s) 679, 684, 1132, 1202
MfeI CAATTG 2 cut(s) 36, 180
MflI RGATCY 3 cut(s) 716, 866, 1132
MhlI GDGCHC 1 cut(s) 902
MlsI TGGCCA 1 cut(s) 625
MluCI AATT 6 cut(s) 36, 69, 180, 467, 506, 1193
MluNI TGGCCA 1 cut(s) 625
MlyI GAGTC 4 cut(s) 58, 183, 298, 578
MmeI TCCRAC 3 cut(s) 359, 1026, 1081
MnlI CCTC 9 cut(s) 155, 279, 396, 505, 530, 791, 968, 1016, 1207
Mox20I TGGCCA 1 cut(s) 625
Mph1103I ATGCAT 1 cut(s) 398
MroI TCCGGA 1 cut(s) 306
MscI TGGCCA 1 cut(s) 625
MseI TTAA 5 cut(s) 204, 258, 317, 465, 786
Msp20I TGGCCA 1 cut(s) 625
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 3 cut(s) 307, 456, 958
MspR9I CCNGG 6 cut(s) 375, 456, 457, 692, 959, 1060
MunI CAATTG 2 cut(s) 36, 180
Mva1269I GAATGC 1 cut(s) 8
MvaI CCWGG 3 cut(s) 375, 692, 1060
MwoI GCNNNNNNNGC 4 cut(s) 437, 929, 993, 1037
NciI CCSGG 3 cut(s) 456, 457, 959
NcoI CCATGG 2 cut(s) 934, 1150
NdeI CATATG 1 cut(s) 778
NdeII GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
NlaIII CATG 4 cut(s) 410, 816, 938, 1154
NlaIV GGNNCC 2 cut(s) 454, 490
NmuCI GTSAC 3 cut(s) 175, 842, 1017
NsiI ATGCAT 1 cut(s) 398
NspI RCATGY 2 cut(s) 410, 816
PaeI GCATGC 2 cut(s) 410, 816
PctI GAATGC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 675, 1112
PfoI TCCNGGA 1 cut(s) 690
PkrI GCNGC 2 cut(s) 931, 1093
PleI GAGTC 4 cut(s) 58, 182, 297, 577
PpsI GAGTC 4 cut(s) 58, 182, 297, 577
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 3 cut(s) 373, 690, 1058
PspGI CCWGG 3 cut(s) 373, 690, 1058
PspN4I GGNNCC 2 cut(s) 454, 490
PspPI GGNCC 4 cut(s) 452, 489, 1154, 1162
PspPPI RGGWCCY 1 cut(s) 452
PsrI GAACNNNNNNTAC 2 cut(s) 593, 625
PstI CTGCAG 1 cut(s) 353
PsuI RGATCY 3 cut(s) 716, 866, 1132
RsaI GTAC 6 cut(s) 131, 209, 325, 425, 480, 940
RsaNI GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
SaqAI TTAA 5 cut(s) 204, 258, 317, 465, 786
SatI GCNGC 2 cut(s) 930, 1092
Sau3AI GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
Sau96I GGNCC 4 cut(s) 452, 489, 1154, 1162
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 4 cut(s) 58, 183, 298, 578
ScrFI CCNGG 6 cut(s) 375, 456, 457, 692, 959, 1060
SduI GDGCHC 1 cut(s) 902
SfaNI GCATC 4 cut(s) 148, 427, 602, 1192
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 3 cut(s) 452, 489, 1162
SmaI CCCGGG 1 cut(s) 457
SmlI CTYRAG 2 cut(s) 203, 656
SmoI CTYRAG 2 cut(s) 203, 656
SphI GCATGC 2 cut(s) 410, 816
Sse9I AATT 6 cut(s) 36, 69, 180, 467, 506, 1193
SsiI CCGC 3 cut(s) 364, 587, 949
StyD4I CCNGG 6 cut(s) 373, 454, 455, 690, 957, 1058
StyI CCWWGG 4 cut(s) 139, 934, 1128, 1150
TaaI ACNGT 4 cut(s) 328, 755, 943, 1108
TaqI TCGA 2 cut(s) 42, 67
TasI AATT 6 cut(s) 36, 69, 180, 467, 506, 1193
TatI WGTACW 2 cut(s) 129, 207
TfiI GAWTC 2 cut(s) 675, 1112
Tru1I TTAA 5 cut(s) 204, 258, 317, 465, 786
Tru9I TTAA 5 cut(s) 204, 258, 317, 465, 786
TscAI CASTG 3 cut(s) 172, 568, 610
TseFI GTSAC 3 cut(s) 175, 842, 1017
TseI GCWGC 2 cut(s) 929, 1091
Tsp45I GTSAC 3 cut(s) 175, 842, 1017
TspDTI ATGAA 5 cut(s) 72, 261, 614, 717, 762
TspGWI ACGGA 1 cut(s) 1154
TspMI CCCGGG 1 cut(s) 455
TspRI CASTG 3 cut(s) 172, 568, 610
Vha464I CTTAAG 1 cut(s) 203
VpaK11BI GGWCC 3 cut(s) 452, 489, 1162
XapI RAATTY 3 cut(s) 69, 506, 1193
XceI RCATGY 2 cut(s) 410, 816
XmaI CCCGGG 1 cut(s) 455
ZrmI AGTACT 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.