Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002263.1

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

29893 .. 34442

Gene Structure 4550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002263.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ctggatatcaagtactttgatcttggcctccctaatcgtgatgccaccagtgatagagtcacaattgaaagtgcagaagctactcttaagtacaatgtagcaatcaagtgtgcaactataactcctgatgaaactcgtgttaaggagttcaacttgaaacagatgtggaggagtccaaatgggacaatccggaacattttaaatggtactgtttttagagaacctattatctgcagaaatgttccccgccttgttccaggttggacgaggccaatatgcattgggaggcatgctttcggtgatcagtaccgagcaactgatgcaatcataaaaggacctgggaaacttaaattagtttttgtacctgatgggtccaatgagaagcaagaatatgaggttttcaactttattggtgctggaggggtagctctgtcaatgtataacactgatgagtctatccgatcctttgcggatgcatctatgaatactgcctaccagaaaaagtggccactttatcttagcactaaaaatactattctcaagaaatatgatggaagattcaaggacatcttccaggaagtttatgaaactcattggagatccagatttgaagcctcatcgaaatatccctccccgacggatattatgttggccatgacaaggaagaagagtccatctttagtctgcaacagaaaatgtcagggtgatgctgatgggtatgatttagttgtttttgatgccatgcataaagcaacctatgcaagtagaatttgtcacttgtgccgacctaattgtgaagcaaaagttactgctgtagatgatcgttaccagattggaatctacactgtacgtaagattcaatacggtgaagagatcacattggactacaactctattaaggaggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

302

Amino Acids

34.48

Weight (kDa)

8.96

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	2 cut(s)	247, 470
AclWI	GGATC	2 cut(s)	456, 594
AcoI	YGGCCR	2 cut(s)	506, 651
AcsI	RAATTY	1 cut(s)	768
AfaI	GTAC	6 cut(s)	14, 92, 208, 308, 363, 849
AfiI	CCNNNNNNNGG	1 cut(s)	660
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	7 cut(s)	68, 151, 157, 403, 562, 611, 860
AjnI	CCWGG	3 cut(s)	256, 337, 573
AluBI	AGCT	2 cut(s)	80, 428
AluI	AGCT	2 cut(s)	80, 428
AlwI	GGATC	2 cut(s)	456, 594
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	4 cut(s)	25, 269, 506, 651
ApoI	RAATTY	1 cut(s)	768
AspS9I	GGNCC	2 cut(s)	335, 372
AsuHPI	GGTGA	3 cut(s)	311, 716, 878
AvaII	GGWCC	2 cut(s)	335, 372
BalI	TGGCCA	2 cut(s)	508, 653
BauI	CACGAG	1 cut(s)	135
BccI	CCATC	4 cut(s)	362, 545, 682, 707
BciT130I	CCWGG	3 cut(s)	258, 339, 575
BclI	TGATCA	1 cut(s)	301
BfmI	CTRYAG	2 cut(s)	232, 813
BfrI	CTTAAG	1 cut(s)	86
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	3 cut(s)	258, 339, 575
Bme18I	GGWCC	2 cut(s)	335, 372
BmgT120I	GGNCC	2 cut(s)	335, 372
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	3 cut(s)	258, 339, 575
BmsI	GCATC	6 cut(s)	31, 310, 463, 485, 697, 727
BpmI	CTGGAG	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	524
BsaAI	YACGTR	1 cut(s)	851
BsaBI	GATNNNNATC	1 cut(s)	836
BsaJI	CCNNGG	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	836
BseAI	TCCGGA	1 cut(s)	189
BseBI	CCWGG	3 cut(s)	258, 339, 575
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	836
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	4 cut(s)	27, 271, 508, 653
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	4 cut(s)	27, 271, 508, 653
Bsp13I	TCCGGA	1 cut(s)	189
Bsp143I	GATC	6 cut(s)	19, 301, 461, 599, 820, 873
BspACI	CCGC	2 cut(s)	247, 470
BspANI	GGCC	4 cut(s)	27, 271, 508, 653
BspEI	TCCGGA	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	373
BspMAI	CTGCAG	1 cut(s)	236
BspPI	GGATC	2 cut(s)	456, 594
BspTI	CTTAAG	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	6 cut(s)	19, 301, 461, 599, 820, 873
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	258, 339, 575
Bst4CI	ACNGT	3 cut(s)	211, 847, 866
Bst6I	CTCTTC	2 cut(s)	662, 864
BstAFI	CTTAAG	1 cut(s)	86
BstAPI	GCANNNNNTGC	2 cut(s)	320, 758
BstBAI	YACGTR	1 cut(s)	851
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	518
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	6 cut(s)	22, 304, 464, 602, 823, 876
BstMBI	GATC	6 cut(s)	19, 301, 461, 599, 820, 873
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 758
BstNI	CCWGG	3 cut(s)	258, 339, 575
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	256, 337, 573
BstSFI	CTRYAG	2 cut(s)	232, 813
BstSNI	TACGTA	1 cut(s)	851
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
BsuRI	GGCC	4 cut(s)	27, 271, 508, 653
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	3 cut(s)	55, 444, 843
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	335, 372
Csp6I	GTAC	6 cut(s)	13, 91, 207, 307, 362, 848
CviAII	CATG	3 cut(s)	290, 655, 742
CviJI	RGCY	7 cut(s)	27, 80, 271, 428, 508, 614, 653
CviKI_1	RGCY	7 cut(s)	27, 80, 271, 428, 508, 614, 653
CviQI	GTAC	6 cut(s)	13, 91, 207, 307, 362, 848
DdeI	CTNAG	1 cut(s)	518
DpnI	GATC	6 cut(s)	21, 303, 463, 601, 822, 875
DpnII	GATC	6 cut(s)	19, 301, 461, 599, 820, 873
DraI	TTTAAA	1 cut(s)	201
EaeI	YGGCCR	2 cut(s)	506, 651
Eam1104I	CTCTTC	2 cut(s)	662, 864
EarI	CTCTTC	2 cut(s)	662, 864
Eco105I	TACGTA	1 cut(s)	851
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	335, 372
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRII	CCWGG	3 cut(s)	256, 337, 573
EcoRV	GATATC	1 cut(s)	7
EcoT22I	ATGCAT	3 cut(s)	281, 478, 747
FaeI	CATG	3 cut(s)	293, 658, 745
FalI	AAGNNNNNCTT	4 cut(s)	69, 101, 554, 586
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	3 cut(s)	289, 654, 741
FauI	CCCGC	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	301
FokI	GGATG	1 cut(s)	485
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	4 cut(s)	27, 271, 508, 653
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	3 cut(s)	293, 658, 745
HinfI	GANTC	7 cut(s)	57, 172, 452, 558, 670, 837, 856
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	3 cut(s)	311, 716, 878
Hpy188I	TCNGA	2 cut(s)	461, 908
Hpy188III	TCNNGA	5 cut(s)	38, 125, 190, 541, 603
Hpy99I	CGWCG	1 cut(s)	640
HpyCH4III	ACNGT	3 cut(s)	211, 847, 866
HpyCH4IV	ACGT	1 cut(s)	850
HpyCH4V	TGCA	9 cut(s)	74, 113, 234, 279, 323, 476, 687, 745, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 758
HpyF3I	CTNAG	1 cut(s)	518
HpySE526I	ACGT	1 cut(s)	850
Hsp92II	CATG	3 cut(s)	293, 658, 745
Kpn2I	TCCGGA	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	6 cut(s)	19, 301, 461, 599, 820, 873
LweI	GCATC	6 cut(s)	31, 310, 463, 485, 697, 727
MaeII	ACGT	1 cut(s)	850
MaeIII	GTNAC	4 cut(s)	58, 773, 805, 824
MalI	GATC	6 cut(s)	21, 303, 463, 601, 822, 875
MboI	GATC	6 cut(s)	19, 301, 461, 599, 820, 873
MboII	GAAGA	5 cut(s)	562, 567, 676, 679, 881
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	599
MlsI	TGGCCA	2 cut(s)	508, 653
MluCI	AATT	4 cut(s)	63, 350, 768, 790
MluNI	TGGCCA	2 cut(s)	508, 653
MlyI	GAGTC	4 cut(s)	66, 181, 461, 679
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	9 cut(s)	38, 162, 261, 279, 388, 413, 625, 640, 895
Mox20I	TGGCCA	2 cut(s)	508, 653
Mph1103I	ATGCAT	3 cut(s)	281, 478, 747
MroI	TCCGGA	1 cut(s)	189
MscI	TGGCCA	2 cut(s)	508, 653
MseI	TTAA	5 cut(s)	87, 141, 200, 348, 897
Msp20I	TGGCCA	2 cut(s)	508, 653
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	3 cut(s)	258, 339, 575
MunI	CAATTG	1 cut(s)	63
MvaI	CCWGG	3 cut(s)	258, 339, 575
MwoI	GCNNNNNNNGC	2 cut(s)	320, 758
NdeII	GATC	6 cut(s)	19, 301, 461, 599, 820, 873
NlaIII	CATG	3 cut(s)	293, 658, 745
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	2 cut(s)	58, 773
NsiI	ATGCAT	3 cut(s)	281, 478, 747
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PfeI	GAWTC	3 cut(s)	558, 837, 856
PfoI	TCCNGGA	1 cut(s)	573
PleI	GAGTC	4 cut(s)	65, 180, 460, 678
PpsI	GAGTC	4 cut(s)	65, 180, 460, 678
Ppu21I	YACGTR	1 cut(s)	851
PpuMI	RGGWCCY	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	3 cut(s)	256, 337, 573
PspGI	CCWGG	3 cut(s)	256, 337, 573
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	335, 372
PspPPI	RGGWCCY	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	599
RsaI	GTAC	6 cut(s)	14, 92, 208, 308, 363, 849
RsaNI	GTAC	6 cut(s)	13, 91, 207, 307, 362, 848
SaqAI	TTAA	5 cut(s)	87, 141, 200, 348, 897
Sau3AI	GATC	6 cut(s)	19, 301, 461, 599, 820, 873
Sau96I	GGNCC	2 cut(s)	335, 372
ScaI	AGTACT	1 cut(s)	14
SchI	GAGTC	4 cut(s)	66, 181, 461, 679
ScrFI	CCNGG	3 cut(s)	258, 339, 575
SfaNI	GCATC	6 cut(s)	31, 310, 463, 485, 697, 727
SfcI	CTRYAG	2 cut(s)	232, 813
SinI	GGWCC	2 cut(s)	335, 372
SmlI	CTYRAG	2 cut(s)	86, 539
SmoI	CTYRAG	2 cut(s)	86, 539
SnaBI	TACGTA	1 cut(s)	851
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	4 cut(s)	63, 350, 768, 790
SsiI	CCGC	2 cut(s)	247, 470
StyD4I	CCNGG	3 cut(s)	256, 337, 573
TaaI	ACNGT	3 cut(s)	211, 847, 866
TaiI	ACGT	1 cut(s)	853
TaqI	TCGA	1 cut(s)	620
TasI	AATT	4 cut(s)	63, 350, 768, 790
TatI	WGTACW	2 cut(s)	12, 90
TfiI	GAWTC	3 cut(s)	558, 837, 856
Tru1I	TTAA	5 cut(s)	87, 141, 200, 348, 897
Tru9I	TTAA	5 cut(s)	87, 141, 200, 348, 897
TscAI	CASTG	3 cut(s)	55, 451, 850
TseFI	GTSAC	2 cut(s)	58, 773
Tsp45I	GTSAC	2 cut(s)	58, 773
TspDTI	ATGAA	3 cut(s)	144, 497, 600
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	3 cut(s)	55, 451, 850
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	335, 372
XapI	RAATTY	1 cut(s)	768
XceI	RCATGY	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	14
Zsp2I	ATGCAT	3 cut(s)	281, 478, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.