Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

46990280 .. 46991909

Gene Structure 1630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATGCATTGTTTCCATGATGCAGGAGATGAAATGACTCGAATTTTCTGGAAATCTATAAAAGATAAGCTTATTTTGCCCTTTCTGGAACTGGATATCAAGTACTTTGATCTTGGCCTCCCTAATCGTGATGCCACCAGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACGAGGCCAATATGCATTGGGAGGCATGCTTTCGGTGATCAGTACCAAGCAACTGATGCAATCATAAAAGGACCTGGGAAACTTAAATTAGTTTTTGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

174

Amino Acids

19.79

Weight (kDa)

7.66

Isoelectric Point (pI)

27.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	8 - 172	2e-23	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	279
AciI	CCGC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	4 cut(s)	104, 182, 298, 398
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	5 cut(s)	158, 241, 247, 452, 466
AjnI	CCWGG	2 cut(s)	346, 427
AluBI	AGCT	3 cut(s)	70, 170, 491
AluI	AGCT	3 cut(s)	70, 170, 491
Aor13HI	TCCGGA	1 cut(s)	279
AoxI	GGCC	2 cut(s)	115, 359
ApoI	RAATTY	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	225
BciT130I	CCWGG	2 cut(s)	348, 429
BclI	TGATCA	1 cut(s)	391
BfmI	CTRYAG	1 cut(s)	322
BfrI	CTTAAG	1 cut(s)	176
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	348, 429
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmrFI	CCNGG	2 cut(s)	348, 429
BmsI	GCATC	3 cut(s)	10, 121, 400
BpmI	CTGGAG	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bse1I	ACTGG	3 cut(s)	96, 138, 478
BseAI	TCCGGA	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	348, 429
BseDI	CCNNGG	1 cut(s)	428
BseNI	ACTGG	3 cut(s)	96, 138, 478
BseRI	GAGGAG	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	117, 361
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	117, 361
Bsp13I	TCCGGA	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	109, 391
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	2 cut(s)	117, 361
BspEI	TCCGGA	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	326
BspTI	CTTAAG	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	96, 138, 478
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	2 cut(s)	109, 391
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	348, 429
Bst4CI	ACNGT	1 cut(s)	301
BstAFI	CTTAAG	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	381
BstKTI	GATC	2 cut(s)	112, 394
BstMBI	GATC	2 cut(s)	109, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 410
BstNI	CCWGG	2 cut(s)	348, 429
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	346, 427
BstSFI	CTRYAG	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	117, 361
BtsIMutI	CAGTG	2 cut(s)	145, 507
Cac8I	GCNNGC	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	4 cut(s)	103, 181, 297, 397
CviAII	CATG	2 cut(s)	17, 380
CviJI	RGCY	5 cut(s)	70, 117, 170, 361, 491
CviKI_1	RGCY	5 cut(s)	70, 117, 170, 361, 491
CviQI	GTAC	4 cut(s)	103, 181, 297, 397
DpnI	GATC	2 cut(s)	111, 393
DpnII	GATC	2 cut(s)	109, 391
DraI	TTTAAA	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	346, 427
EcoRV	GATATC	1 cut(s)	97
EcoT22I	ATGCAT	2 cut(s)	9, 371
FaeI	CATG	2 cut(s)	20, 383
FaiI	YATR	8 cut(s)	18, 59, 209, 367, 381, 419, 456, 504
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 159, 191
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	16, 379
FauI	CCCGC	1 cut(s)	344
FbaI	TGATCA	1 cut(s)	391
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	2 cut(s)	117, 361
HapII	CCGG	1 cut(s)	280
Hin1II	CATG	2 cut(s)	20, 383
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	4 cut(s)	37, 147, 262, 515
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	1 cut(s)	524
Hpy188III	TCNNGA	5 cut(s)	49, 86, 128, 215, 280
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	7 cut(s)	7, 23, 164, 203, 324, 369, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 410
Hsp92II	CATG	2 cut(s)	20, 383
Kpn2I	TCCGGA	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	109, 391
LweI	GCATC	3 cut(s)	10, 121, 400
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	111, 393
MboI	GATC	2 cut(s)	109, 391
MfeI	CAATTG	1 cut(s)	153
MluCI	AATT	3 cut(s)	42, 153, 440
MlyI	GAGTC	4 cut(s)	31, 156, 271, 524
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	6 cut(s)	128, 252, 351, 369, 451, 476
Mph1103I	ATGCAT	2 cut(s)	9, 371
MroI	TCCGGA	1 cut(s)	279
MseI	TTAA	4 cut(s)	177, 231, 290, 438
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	2 cut(s)	348, 429
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	2 cut(s)	348, 429
MwoI	GCNNNNNNNGC	2 cut(s)	76, 410
NdeII	GATC	2 cut(s)	109, 391
NlaIII	CATG	2 cut(s)	20, 383
NmuCI	GTSAC	1 cut(s)	148
NsiI	ATGCAT	2 cut(s)	9, 371
NspI	RCATGY	1 cut(s)	383
PaeI	GCATGC	1 cut(s)	383
PleI	GAGTC	4 cut(s)	31, 155, 270, 523
PpsI	GAGTC	4 cut(s)	31, 155, 270, 523
PpuMI	RGGWCCY	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	2 cut(s)	346, 427
PspGI	CCWGG	2 cut(s)	346, 427
PspPI	GGNCC	1 cut(s)	425
PspPPI	RGGWCCY	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	326
RsaI	GTAC	4 cut(s)	104, 182, 298, 398
RsaNI	GTAC	4 cut(s)	103, 181, 297, 397
SaqAI	TTAA	4 cut(s)	177, 231, 290, 438
Sau3AI	GATC	2 cut(s)	109, 391
Sau96I	GGNCC	1 cut(s)	425
ScaI	AGTACT	1 cut(s)	104
SchI	GAGTC	4 cut(s)	31, 156, 271, 524
ScrFI	CCNGG	2 cut(s)	348, 429
SetI	ASST	7 cut(s)	72, 172, 316, 352, 430, 462, 493
SfaNI	GCATC	3 cut(s)	10, 121, 400
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	3 cut(s)	42, 153, 440
SsiI	CCGC	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	346, 427
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	40
TasI	AATT	3 cut(s)	42, 153, 440
TatI	WGTACW	2 cut(s)	102, 180
Tru1I	TTAA	4 cut(s)	177, 231, 290, 438
Tru9I	TTAA	4 cut(s)	177, 231, 290, 438
TscAI	CASTG	2 cut(s)	145, 514
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	45, 234
TspRI	CASTG	2 cut(s)	145, 514
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	104
Zsp2I	ATGCAT	2 cut(s)	9, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.