Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

17971706 .. 17990177

Gene Structure 18472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG086100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCAGCACAGCGGTTGTCGAACCAGGCCTCGATGTCGAGCCTCTGCTTATCGCTGGAGTCGTCGATGAAGAGTTCGAAGTCGACCTTGACCGGCTTCCATGGAGATGAAATGACTCGAATTTTCTGGAAATCTATAAAAGATAAGCTTATTTTGCCCTTTCTGGAACTGGATATCAAGTACTTTGATCTTGGCCTCCCTAATCGTGATGCCACCAGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCAGTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCTATCCTTTGCGGATGCATCTATGAATACTGCCTACCTGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCCTCATCGAAATATCCCTCCCCGACGGATATTATGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGGCAGGGTGATGCTGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAACCTATGCAAGTAGAATTTGTCACTCATGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGATGATCGTTACCAGATTGGAATCTACACTATACGTAAGATTCAATACGGTGAAGAGATCACATTGGACTACAACTCTATTAAGGAGCAACTCAAAAACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

328

Amino Acids

37.4

Weight (kDa)

8.79

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	34 - 219	1.1e-23	Isocitrate/isopropylmalate dehydrogenase
SET	PF00856	195 - 319	8.3e-13	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	357
AciI	CCGC	3 cut(s)	13, 415, 536
AclWI	GGATC	1 cut(s)	660
AcoI	YGGCCR	2 cut(s)	572, 717
AcsI	RAATTY	2 cut(s)	120, 834
AfaI	GTAC	4 cut(s)	182, 260, 376, 429
AfiI	CCNNNNNNNGG	1 cut(s)	726
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	7 cut(s)	236, 319, 325, 469, 628, 677, 926
AjnI	CCWGG	2 cut(s)	24, 639
AluBI	AGCT	3 cut(s)	148, 248, 494
AluI	AGCT	3 cut(s)	148, 248, 494
AlwI	GGATC	1 cut(s)	660
AlwNI	CAGNNNCTG	1 cut(s)	431
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	4 cut(s)	27, 193, 572, 717
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	120, 834
AspS9I	GGNCC	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	782, 944
AsuII	TTCGAA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	438
BalI	TGGCCA	2 cut(s)	574, 719
BauI	CACGAG	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	4 cut(s)	428, 611, 748, 773
BciT130I	CCWGG	2 cut(s)	26, 641
BfmI	CTRYAG	2 cut(s)	400, 879
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	26, 641
Bme18I	GGWCC	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	2 cut(s)	26, 641
BmsI	GCATC	5 cut(s)	199, 529, 551, 763, 793
BpmI	CTGGAG	2 cut(s)	77, 504
Bpu14I	TTCGAA	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	590
BsaAI	YACGTR	1 cut(s)	917
BsaBI	GATNNNNATC	1 cut(s)	902
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	726
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	4 cut(s)	174, 216, 425, 481
Bse8I	GATNNNNATC	1 cut(s)	902
BseAI	TCCGGA	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	26, 641
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	544
BseJI	GATNNNNATC	1 cut(s)	902
BseLI	CCNNNNNNNGG	1 cut(s)	726
BseNI	ACTGG	4 cut(s)	174, 216, 425, 481
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	4 cut(s)	29, 195, 574, 719
BsiSI	CCGG	2 cut(s)	93, 358
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	726
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	4 cut(s)	29, 195, 574, 719
Bsp119I	TTCGAA	1 cut(s)	77
Bsp13I	TCCGGA	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	187, 665, 886, 939
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	3 cut(s)	13, 415, 536
BspANI	GGCC	4 cut(s)	29, 195, 574, 719
BspEI	TCCGGA	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	439
BspMAI	CTGCAG	1 cut(s)	404
BspPI	GGATC	1 cut(s)	660
BspT104I	TTCGAA	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	4 cut(s)	174, 216, 425, 481
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	4 cut(s)	187, 665, 886, 939
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	26, 641
Bst4CI	ACNGT	2 cut(s)	379, 932
Bst6I	CTCTTC	3 cut(s)	65, 728, 930
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstBAI	YACGTR	1 cut(s)	917
BstBI	TTCGAA	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	584
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	544
BstKTI	GATC	4 cut(s)	190, 668, 889, 942
BstMBI	GATC	4 cut(s)	187, 665, 886, 939
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 824
BstNI	CCWGG	2 cut(s)	26, 641
BstSCI	CCNGG	2 cut(s)	24, 639
BstSFI	CTRYAG	2 cut(s)	400, 879
BstSNI	TACGTA	1 cut(s)	917
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BsuRI	GGCC	4 cut(s)	29, 195, 574, 719
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	223, 510
CaiI	CAGNNNCTG	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	438
Csp6I	GTAC	4 cut(s)	181, 259, 375, 428
CviAII	CATG	4 cut(s)	101, 721, 808, 846
CviQI	GTAC	4 cut(s)	181, 259, 375, 428
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	4 cut(s)	189, 667, 888, 941
DpnII	GATC	4 cut(s)	187, 665, 886, 939
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	572, 717
Eam1104I	CTCTTC	3 cut(s)	65, 728, 930
EarI	CTCTTC	3 cut(s)	65, 728, 930
Eco105I	TACGTA	1 cut(s)	917
Eco130I	CCWWGG	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	24, 639
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	100
EcoT22I	ATGCAT	2 cut(s)	544, 813
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	4 cut(s)	104, 724, 811, 849
FalI	AAGNNNNNCTT	8 cut(s)	71, 103, 132, 164, 237, 269, 620, 652
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	4 cut(s)	100, 720, 807, 845
FauI	CCCGC	1 cut(s)	422
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	2 cut(s)	77, 504
HaeIII	GGCC	4 cut(s)	29, 195, 574, 719
HapII	CCGG	2 cut(s)	93, 358
Hin1II	CATG	4 cut(s)	104, 724, 811, 849
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	9 cut(s)	59, 115, 225, 340, 518, 624, 736, 903, 922
HpaII	CCGG	2 cut(s)	93, 358
HphI	GGTGA	2 cut(s)	782, 944
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188III	TCNNGA	7 cut(s)	127, 164, 206, 293, 358, 607, 669
Hpy8I	GTNNAC	1 cut(s)	84
Hpy99I	CGWCG	2 cut(s)	67, 706
HpyCH4III	ACNGT	2 cut(s)	379, 932
HpyCH4IV	ACGT	1 cut(s)	916
HpyCH4V	TGCA	7 cut(s)	242, 281, 402, 542, 753, 811, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 824
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	1 cut(s)	916
Hsp92II	CATG	4 cut(s)	104, 724, 811, 849
Kpn2I	TCCGGA	1 cut(s)	357
Kzo9I	GATC	4 cut(s)	187, 665, 886, 939
LmnI	GCTCC	1 cut(s)	967
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	5 cut(s)	199, 529, 551, 763, 793
MaeII	ACGT	1 cut(s)	916
MaeIII	GTNAC	4 cut(s)	226, 839, 871, 890
MalI	GATC	4 cut(s)	189, 667, 888, 941
MboI	GATC	4 cut(s)	187, 665, 886, 939
MboII	GAAGA	6 cut(s)	82, 628, 633, 742, 745, 947
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	665
MlsI	TGGCCA	2 cut(s)	574, 719
MluCI	AATT	4 cut(s)	120, 231, 834, 856
MluNI	TGGCCA	2 cut(s)	574, 719
MlyI	GAGTC	6 cut(s)	68, 109, 234, 349, 527, 745
MnlI	CCTC	8 cut(s)	40, 53, 206, 330, 454, 479, 691, 706
Mox20I	TGGCCA	2 cut(s)	574, 719
Mph1103I	ATGCAT	2 cut(s)	544, 813
MroI	TCCGGA	1 cut(s)	357
MscI	TGGCCA	2 cut(s)	574, 719
MseI	TTAA	4 cut(s)	255, 309, 368, 963
MslI	CAYNNNNRTG	1 cut(s)	105
Msp20I	TGGCCA	2 cut(s)	574, 719
MspA1I	CMGCKG	1 cut(s)	13
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	93, 358
MspR9I	CCNGG	2 cut(s)	26, 641
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	2 cut(s)	26, 641
MwoI	GCNNNNNNNGC	2 cut(s)	154, 824
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	4 cut(s)	187, 665, 886, 939
NlaIII	CATG	4 cut(s)	104, 724, 811, 849
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	2 cut(s)	226, 839
NsiI	ATGCAT	2 cut(s)	544, 813
NspV	TTCGAA	1 cut(s)	77
PceI	AGGCCT	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	624, 903, 922
PfoI	TCCNGGA	1 cut(s)	639
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	6 cut(s)	67, 109, 233, 348, 526, 744
PpsI	GAGTC	6 cut(s)	67, 109, 233, 348, 526, 744
Ppu21I	YACGTR	1 cut(s)	917
Psp6I	CCWGG	2 cut(s)	24, 639
PspGI	CCWGG	2 cut(s)	24, 639
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	1 cut(s)	438
PstI	CTGCAG	1 cut(s)	404
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	665
RsaI	GTAC	4 cut(s)	182, 260, 376, 429
RsaNI	GTAC	4 cut(s)	181, 259, 375, 428
RseI	CAYNNNNRTG	1 cut(s)	105
SalI	GTCGAC	1 cut(s)	82
SaqAI	TTAA	4 cut(s)	255, 309, 368, 963
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	187, 665, 886, 939
Sau96I	GGNCC	1 cut(s)	438
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	6 cut(s)	68, 109, 234, 349, 527, 745
ScrFI	CCNGG	2 cut(s)	26, 641
SfaNI	GCATC	5 cut(s)	199, 529, 551, 763, 793
SfcI	CTRYAG	2 cut(s)	400, 879
SfuI	TTCGAA	1 cut(s)	77
SinI	GGWCC	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	254, 605
SmoI	CTYRAG	2 cut(s)	254, 605
SnaBI	TACGTA	1 cut(s)	917
Sse9I	AATT	4 cut(s)	120, 231, 834, 856
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	3 cut(s)	13, 415, 536
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	24, 639
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	379, 932
TaiI	ACGT	1 cut(s)	919
TaqI	TCGA	8 cut(s)	20, 32, 38, 65, 77, 83, 118, 686
TasI	AATT	4 cut(s)	120, 231, 834, 856
TatI	WGTACW	2 cut(s)	180, 258
TfiI	GAWTC	3 cut(s)	624, 903, 922
Tru1I	TTAA	4 cut(s)	255, 309, 368, 963
Tru9I	TTAA	4 cut(s)	255, 309, 368, 963
TscAI	CASTG	2 cut(s)	223, 517
TseFI	GTSAC	2 cut(s)	226, 839
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	226, 839
TspDTI	ATGAA	5 cut(s)	83, 123, 312, 563, 666
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	2 cut(s)	223, 517
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	438
XapI	RAATTY	2 cut(s)	120, 834
XmiI	GTMKAC	1 cut(s)	83
ZrmI	AGTACT	1 cut(s)	182
Zsp2I	ATGCAT	2 cut(s)	544, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.