Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

42965339 .. 42967492

Gene Structure 2154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57581

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGATGCATTGTTTCCATGATTCAGGAGATGAAATGACTCGAATTTTCTGGAAATCTATAAAAGATAAGCTTATTTTTCCCTTTCTGGAACTGGATATCAAGTACTTTGATCTTGGCCTCCCTAATCGTGATGCCACCAGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACGAGGCCAATATGCATTGGGAGGCATGCTTTCGGTGATCAGTACCGAGCAACTGATGCAATCATAAAAGGACCTGGGAAACTTAAATCAGTTTTTGTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCCTCATCGAAATATCCCTCCCTGACGGATATTATGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGTTTGTCACAGAAGGCCATTTTCCAACAGCATACTTTATTTGAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

280

Amino Acids

32.28

Weight (kDa)

9.36

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	8 - 227	1.1e-34	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	279
AciI	CCGC	2 cut(s)	337, 560
AclWI	GGATC	2 cut(s)	546, 684
AcoI	YGGCCR	2 cut(s)	596, 741
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	5 cut(s)	104, 182, 298, 398, 453
AfiI	CCNNNNNNNGG	1 cut(s)	750
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	6 cut(s)	158, 241, 247, 493, 652, 701
AjnI	CCWGG	3 cut(s)	346, 427, 663
AluBI	AGCT	3 cut(s)	70, 170, 518
AluI	AGCT	3 cut(s)	70, 170, 518
AlwI	GGATC	2 cut(s)	546, 684
Aor13HI	TCCGGA	1 cut(s)	279
AoxI	GGCC	5 cut(s)	115, 359, 596, 741, 806
ApoI	RAATTY	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	425, 462
AsuHPI	GGTGA	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	425, 462
BalI	TGGCCA	2 cut(s)	598, 743
BauI	CACGAG	1 cut(s)	225
BccI	CCATC	3 cut(s)	452, 635, 772
BciT130I	CCWGG	3 cut(s)	348, 429, 665
BclI	TGATCA	1 cut(s)	391
BfmI	CTRYAG	1 cut(s)	322
BfrI	CTTAAG	1 cut(s)	176
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	348, 429, 665
Bme18I	GGWCC	2 cut(s)	425, 462
BmgT120I	GGNCC	2 cut(s)	425, 462
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	3 cut(s)	348, 429, 665
BmsI	GCATC	4 cut(s)	121, 400, 553, 575
BpmI	CTGGAG	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	614
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	750
Bse1I	ACTGG	3 cut(s)	96, 138, 505
BseAI	TCCGGA	1 cut(s)	279
BseBI	CCWGG	3 cut(s)	348, 429, 665
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	750
BseNI	ACTGG	3 cut(s)	96, 138, 505
BseRI	GAGGAG	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	5 cut(s)	117, 361, 598, 743, 808
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	750
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	5 cut(s)	117, 361, 598, 743, 808
Bsp13I	TCCGGA	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	109, 391, 551, 689
BspACI	CCGC	2 cut(s)	337, 560
BspANI	GGCC	5 cut(s)	117, 361, 598, 743, 808
BspEI	TCCGGA	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	463
BspMAI	CTGCAG	1 cut(s)	326
BspPI	GGATC	2 cut(s)	546, 684
BspTI	CTTAAG	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	96, 138, 505
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	4 cut(s)	109, 391, 551, 689
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	3 cut(s)	348, 429, 665
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	752
BstAFI	CTTAAG	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	608, 840
BstF5I	GGATG	1 cut(s)	568
BstKTI	GATC	4 cut(s)	112, 394, 554, 692
BstMBI	GATC	4 cut(s)	109, 391, 551, 689
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	3 cut(s)	348, 429, 665
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	3 cut(s)	346, 427, 663
BstSFI	CTRYAG	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
BsuRI	GGCC	5 cut(s)	117, 361, 598, 743, 808
BtsCI	GGATG	1 cut(s)	568
BtsIMutI	CAGTG	2 cut(s)	145, 534
Cac8I	GCNNGC	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	425, 462
Csp6I	GTAC	5 cut(s)	103, 181, 297, 397, 452
CviAII	CATG	3 cut(s)	17, 380, 745
CviJI	RGCY	9 cut(s)	70, 117, 170, 361, 518, 598, 704, 743, 808
CviKI_1	RGCY	9 cut(s)	70, 117, 170, 361, 518, 598, 704, 743, 808
CviQI	GTAC	5 cut(s)	103, 181, 297, 397, 452
DdeI	CTNAG	2 cut(s)	608, 840
DpnI	GATC	4 cut(s)	111, 393, 553, 691
DpnII	GATC	4 cut(s)	109, 391, 551, 689
DraI	TTTAAA	1 cut(s)	291
EaeI	YGGCCR	2 cut(s)	596, 741
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	425, 462
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	3 cut(s)	346, 427, 663
EcoRV	GATATC	1 cut(s)	97
EcoT22I	ATGCAT	3 cut(s)	9, 371, 568
FaeI	CATG	3 cut(s)	20, 383, 748
FalI	AAGNNNNNCTT	6 cut(s)	54, 86, 159, 191, 644, 676
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	3 cut(s)	16, 379, 744
FauI	CCCGC	1 cut(s)	344
FbaI	TGATCA	1 cut(s)	391
FokI	GGATG	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	5 cut(s)	117, 361, 598, 743, 808
HapII	CCGG	1 cut(s)	280
Hin1II	CATG	3 cut(s)	20, 383, 748
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	7 cut(s)	20, 37, 147, 262, 542, 648, 760
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	8 cut(s)	24, 49, 86, 128, 215, 280, 631, 693
HpyAV	CCTTC	1 cut(s)	798
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	8 cut(s)	7, 164, 203, 324, 369, 413, 566, 777
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	608, 840
Hsp92II	CATG	3 cut(s)	20, 383, 748
Kpn2I	TCCGGA	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	109, 391, 551, 689
LweI	GCATC	4 cut(s)	121, 400, 553, 575
MaeIII	GTNAC	2 cut(s)	148, 797
MalI	GATC	4 cut(s)	111, 393, 553, 691
MboI	GATC	4 cut(s)	109, 391, 551, 689
MboII	GAAGA	4 cut(s)	652, 657, 766, 769
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	689
MlsI	TGGCCA	2 cut(s)	598, 743
MluCI	AATT	2 cut(s)	42, 153
MluNI	TGGCCA	2 cut(s)	598, 743
MlyI	GAGTC	5 cut(s)	31, 156, 271, 551, 769
MmeI	TCCRAC	2 cut(s)	332, 840
MnlI	CCTC	8 cut(s)	128, 252, 351, 369, 478, 503, 715, 730
Mox20I	TGGCCA	2 cut(s)	598, 743
Mph1103I	ATGCAT	3 cut(s)	9, 371, 568
MroI	TCCGGA	1 cut(s)	279
MscI	TGGCCA	2 cut(s)	598, 743
MseI	TTAA	4 cut(s)	177, 231, 290, 438
Msp20I	TGGCCA	2 cut(s)	598, 743
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	3 cut(s)	348, 429, 665
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	3 cut(s)	348, 429, 665
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	4 cut(s)	109, 391, 551, 689
NlaIII	CATG	3 cut(s)	20, 383, 748
NlaIV	GGNNCC	1 cut(s)	463
NmuCI	GTSAC	2 cut(s)	148, 797
NsiI	ATGCAT	3 cut(s)	9, 371, 568
NspI	RCATGY	1 cut(s)	383
PaeI	GCATGC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	20, 648
PfoI	TCCNGGA	1 cut(s)	663
PleI	GAGTC	5 cut(s)	31, 155, 270, 550, 768
PpsI	GAGTC	5 cut(s)	31, 155, 270, 550, 768
PpuMI	RGGWCCY	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	3 cut(s)	346, 427, 663
PspGI	CCWGG	3 cut(s)	346, 427, 663
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	2 cut(s)	425, 462
PspPPI	RGGWCCY	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	689
RsaI	GTAC	5 cut(s)	104, 182, 298, 398, 453
RsaNI	GTAC	5 cut(s)	103, 181, 297, 397, 452
SaqAI	TTAA	4 cut(s)	177, 231, 290, 438
Sau3AI	GATC	4 cut(s)	109, 391, 551, 689
Sau96I	GGNCC	2 cut(s)	425, 462
ScaI	AGTACT	1 cut(s)	104
SchI	GAGTC	5 cut(s)	31, 156, 271, 551, 769
ScrFI	CCNGG	3 cut(s)	348, 429, 665
SetI	ASST	9 cut(s)	72, 172, 316, 352, 430, 457, 489, 520, 795
SfaNI	GCATC	4 cut(s)	121, 400, 553, 575
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	2 cut(s)	425, 462
SmlI	CTYRAG	2 cut(s)	176, 629
SmoI	CTYRAG	2 cut(s)	176, 629
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	2 cut(s)	42, 153
SsiI	CCGC	2 cut(s)	337, 560
StyD4I	CCNGG	3 cut(s)	346, 427, 663
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	40, 710
TasI	AATT	2 cut(s)	42, 153
TatI	WGTACW	2 cut(s)	102, 180
TfiI	GAWTC	2 cut(s)	20, 648
Tru1I	TTAA	4 cut(s)	177, 231, 290, 438
Tru9I	TTAA	4 cut(s)	177, 231, 290, 438
TscAI	CASTG	2 cut(s)	145, 541
TseFI	GTSAC	2 cut(s)	148, 797
Tsp45I	GTSAC	2 cut(s)	148, 797
TspDTI	ATGAA	4 cut(s)	45, 234, 587, 690
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	2 cut(s)	145, 541
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	2 cut(s)	425, 462
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	104
Zsp2I	ATGCAT	3 cut(s)	9, 371, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.