Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002675.1

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

5704 .. 14726

Gene Structure 9023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002675.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggaggcattcaataagatcaaggtgaccaacccaattgtcgaaatggatgataagcttattttgccctttctggaactggatatcaagtactttgatcttggcctccctaatcgtgatgccaccagtgatagagtcacaattgaaagtgcagaagctactctcaagtacaatgtagcaatcaagtgtgcaactataactcctgatgaaactcgtgttaaggagttcaacttgaaacagatgtggaggagtccaaatgggacaatccggaacattttaaatggtactgtttttagagaacctattatctgcagaaatgttccccgccttgttccaggttggacgaggccaatatgcattgggaggcatgctttcggtgatcagtaccgagcaactgatgcaatcataaaaggacctgggaaacttaaattagtttttgtacctgatgggtccaatgagaagcaagaatatgaggttttcaactttactggtgctggaggggacggagatggtgaatcggaatctggctggggagaacgagttggtgaagaggaagaagcagtgagttggagtaggaggaaggcgaggaagaagaagcggaggtcgcagactcagagatcgccgacgacagtggccggtgggtccgattcgaattccggcgagggctttccagaagcaaggggaggagagaggttgatgggagtcgagagagagagagagagagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

242

Amino Acids

27.14

Weight (kDa)

8.38

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	267
AciI	CCGC	2 cut(s)	325, 598
AcoI	YGGCCR	1 cut(s)	633
AcsI	RAATTY	1 cut(s)	652
AfaI	GTAC	5 cut(s)	92, 170, 286, 386, 441
AgsI	TTSAA	5 cut(s)	13, 146, 229, 235, 481
AjnI	CCWGG	2 cut(s)	334, 415
AluBI	AGCT	2 cut(s)	58, 158
AluI	AGCT	2 cut(s)	58, 158
Aor13HI	TCCGGA	1 cut(s)	267
AoxI	GGCC	3 cut(s)	103, 347, 633
ApoI	RAATTY	1 cut(s)	652
AspS9I	GGNCC	3 cut(s)	413, 450, 642
AsuHPI	GGTGA	4 cut(s)	37, 389, 524, 557
AsuII	TTCGAA	1 cut(s)	650
AvaII	GGWCC	3 cut(s)	413, 450, 642
BauI	CACGAG	1 cut(s)	213
BccI	CCATC	3 cut(s)	440, 503, 691
BciT130I	CCWGG	2 cut(s)	336, 417
BclI	TGATCA	1 cut(s)	379
BfmI	CTRYAG	1 cut(s)	310
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	336, 417
Bme18I	GGWCC	3 cut(s)	413, 450, 642
BmgT120I	GGNCC	3 cut(s)	413, 450, 642
BmiI	GGNNCC	2 cut(s)	451, 643
BmrFI	CCNGG	2 cut(s)	336, 417
BmsI	GCATC	2 cut(s)	109, 388
BpmI	CTGGAG	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	416
BsaWI	WCCGGW	1 cut(s)	267
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 525, 555
Bse118I	RCCGGY	1 cut(s)	635
Bse1I	ACTGG	3 cut(s)	84, 126, 493
BseAI	TCCGGA	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	336, 417
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	3 cut(s)	84, 126, 493
BseRI	GAGGAG	2 cut(s)	262, 699
BseYI	CCCAGC	1 cut(s)	528
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	105, 349, 635
BsiSI	CCGG	3 cut(s)	268, 636, 657
BslFI	GGGAC	2 cut(s)	274, 515
BsmFI	GGGAC	2 cut(s)	274, 515
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	3 cut(s)	105, 349, 635
Bsp119I	TTCGAA	1 cut(s)	650
Bsp13I	TCCGGA	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	18, 97, 379, 617
BspACI	CCGC	2 cut(s)	325, 598
BspANI	GGCC	3 cut(s)	105, 349, 635
BspCNI	CTCAG	1 cut(s)	625
BspEI	TCCGGA	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	451, 643
BspMAI	CTGCAG	1 cut(s)	314
BspT104I	TTCGAA	1 cut(s)	650
BsrFI	RCCGGY	1 cut(s)	635
BsrI	ACTGG	3 cut(s)	84, 126, 493
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	4 cut(s)	18, 97, 379, 617
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	336, 417
Bst4CI	ACNGT	2 cut(s)	289, 631
Bst6I	CTCTTC	1 cut(s)	543
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	650
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	612
BstEII	GGTNACC	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	4 cut(s)	21, 100, 382, 620
BstMBI	GATC	4 cut(s)	18, 97, 379, 617
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 398, 604
BstNI	CCWGG	2 cut(s)	336, 417
BstNSI	RCATGY	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	334, 415
BstSFI	CTRYAG	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	105, 349, 635
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	3 cut(s)	133, 567, 636
Cac8I	GCNNGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	3 cut(s)	413, 450, 642
Csp6I	GTAC	5 cut(s)	91, 169, 285, 385, 440
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	7 cut(s)	58, 105, 158, 349, 528, 635, 666
CviKI_1	RGCY	7 cut(s)	58, 105, 158, 349, 528, 635, 666
CviQI	GTAC	5 cut(s)	91, 169, 285, 385, 440
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	4 cut(s)	20, 99, 381, 619
DpnII	GATC	4 cut(s)	18, 97, 379, 617
DraI	TTTAAA	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	3 cut(s)	413, 450, 642
Eco91I	GGTNACC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	413
EcoO65I	GGTNACC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	2 cut(s)	334, 415
EcoRV	GATATC	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	359
FaeI	CATG	1 cut(s)	371
FaiI	YATR	6 cut(s)	197, 355, 369, 407, 471, 727
FaqI	GGGAC	2 cut(s)	274, 515
FatI	CATG	1 cut(s)	367
FauI	CCCGC	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	379
FokI	GGATG	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	532
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	105, 349, 635
HapII	CCGG	3 cut(s)	268, 636, 657
Hin1II	CATG	1 cut(s)	371
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	7 cut(s)	135, 250, 515, 521, 610, 647, 702
HpaII	CCGG	3 cut(s)	268, 636, 657
HphI	GGTGA	4 cut(s)	37, 389, 524, 557
Hpy188I	TCNGA	3 cut(s)	520, 615, 646
Hpy188III	TCNNGA	6 cut(s)	74, 116, 203, 268, 671, 706
Hpy99I	CGWCG	1 cut(s)	628
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	2 cut(s)	289, 631
HpyCH4V	TGCA	5 cut(s)	152, 191, 312, 357, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 398, 604
HpyF3I	CTNAG	1 cut(s)	612
Hsp92II	CATG	1 cut(s)	371
Kpn2I	TCCGGA	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	18, 97, 379, 617
LweI	GCATC	2 cut(s)	109, 388
MaeIII	GTNAC	2 cut(s)	25, 136
MalI	GATC	4 cut(s)	20, 99, 381, 619
MboI	GATC	4 cut(s)	18, 97, 379, 617
MboII	GAAGA	4 cut(s)	560, 566, 601, 604
MfeI	CAATTG	2 cut(s)	36, 141
MluCI	AATT	4 cut(s)	36, 141, 428, 652
MlyI	GAGTC	4 cut(s)	144, 259, 604, 711
MmeI	TCCRAC	2 cut(s)	320, 548
Mph1103I	ATGCAT	1 cut(s)	359
MroI	TCCGGA	1 cut(s)	267
MseI	TTAA	3 cut(s)	219, 278, 426
MspI	CCGG	3 cut(s)	268, 636, 657
MspR9I	CCNGG	2 cut(s)	336, 417
MunI	CAATTG	2 cut(s)	36, 141
Mva1269I	GAATGC	1 cut(s)	8
MvaI	CCWGG	2 cut(s)	336, 417
MwoI	GCNNNNNNNGC	3 cut(s)	64, 398, 604
NdeII	GATC	4 cut(s)	18, 97, 379, 617
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	2 cut(s)	451, 643
NmuCI	GTSAC	2 cut(s)	25, 136
NsiI	ATGCAT	1 cut(s)	359
NspI	RCATGY	1 cut(s)	371
NspV	TTCGAA	1 cut(s)	650
PaeI	GCATGC	1 cut(s)	371
PctI	GAATGC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	515, 521, 647
PleI	GAGTC	4 cut(s)	143, 258, 604, 710
PpsI	GAGTC	4 cut(s)	143, 258, 604, 710
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	334, 415
PspEI	GGTNACC	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	528
PspGI	CCWGG	2 cut(s)	334, 415
PspN4I	GGNNCC	2 cut(s)	451, 643
PspPI	GGNCC	3 cut(s)	413, 450, 642
PspPPI	RGGWCCY	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	314
RsaI	GTAC	5 cut(s)	92, 170, 286, 386, 441
RsaNI	GTAC	5 cut(s)	91, 169, 285, 385, 440
SaqAI	TTAA	3 cut(s)	219, 278, 426
Sau3AI	GATC	4 cut(s)	18, 97, 379, 617
Sau96I	GGNCC	3 cut(s)	413, 450, 642
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	4 cut(s)	144, 259, 604, 711
ScrFI	CCNGG	2 cut(s)	336, 417
SfaNI	GCATC	2 cut(s)	109, 388
SfcI	CTRYAG	1 cut(s)	310
SfuI	TTCGAA	1 cut(s)	650
SinI	GGWCC	3 cut(s)	413, 450, 642
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	371
Sse9I	AATT	4 cut(s)	36, 141, 428, 652
SsiI	CCGC	2 cut(s)	325, 598
StyD4I	CCNGG	2 cut(s)	334, 415
TaaI	ACNGT	2 cut(s)	289, 631
TaqI	TCGA	3 cut(s)	42, 650, 705
TasI	AATT	4 cut(s)	36, 141, 428, 652
TatI	WGTACW	2 cut(s)	90, 168
TfiI	GAWTC	3 cut(s)	515, 521, 647
Tru1I	TTAA	3 cut(s)	219, 278, 426
Tru9I	TTAA	3 cut(s)	219, 278, 426
TscAI	CASTG	3 cut(s)	133, 567, 636
TseFI	GTSAC	2 cut(s)	25, 136
Tsp45I	GTSAC	2 cut(s)	25, 136
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	3 cut(s)	133, 567, 636
VpaK11BI	GGWCC	3 cut(s)	413, 450, 642
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	1 cut(s)	371
ZrmI	AGTACT	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.