Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

22662522 .. 22695283

Gene Structure 32762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG230500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATTTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACGAGGCCAATATGCATTGGGAGGCATGCTTTCGGTGATCAGTACCGAGCAATTGATGCAATCATAAAAGGACTTGGGAAACTTAAATTAGTTTTTGTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCATTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCCTCATCGAAATATCCCTCCCCGACGGATATTATGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGGTGATGTTGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAACCTATGCAAGTAGAATTTGTCACTCGTGCCGACCTAATTGTGAAGCAAAAGAAGAGCGAAGAGAAAGAACAGGAATCACACCCTTGGATAAAATGACTGCGGAAGTAAAGCCTCAACAACCATTAGTAGTAATGGACCATTACTCATCAAATGAACCCGAAGATATGGTGGCATCAAATAGCATCAACTTTAAAGTCCAAAATTTCGATATCATTCATGAAATGTTAAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

275

Amino Acids

31.49

Weight (kDa)

8.86

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	1 - 143	6.5e-16	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	3 cut(s)	85, 308, 692
AclWI	GGATC	2 cut(s)	294, 432
AcoI	YGGCCR	2 cut(s)	344, 489
AcsI	RAATTY	2 cut(s)	606, 793
AfaI	GTAC	3 cut(s)	46, 146, 201
AfiI	CCNNNNNNNGG	1 cut(s)	498
AgsI	TTSAA	3 cut(s)	241, 400, 449
AjnI	CCWGG	2 cut(s)	94, 411
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
AlwI	GGATC	2 cut(s)	294, 432
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	3 cut(s)	107, 344, 489
ApoI	RAATTY	2 cut(s)	606, 793
AspS9I	GGNCC	2 cut(s)	210, 727
AsuHPI	GGTGA	2 cut(s)	149, 554
AvaII	GGWCC	2 cut(s)	210, 727
BalI	TGGCCA	2 cut(s)	346, 491
BauI	CACGAG	1 cut(s)	616
BccI	CCATC	4 cut(s)	200, 383, 520, 545
BciT130I	CCWGG	2 cut(s)	96, 413
BclI	TGATCA	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	96, 413
Bme18I	GGWCC	2 cut(s)	210, 727
BmgT120I	GGNCC	2 cut(s)	210, 727
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	96, 413
BmsI	GCATC	6 cut(s)	148, 301, 323, 565, 773, 783
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	675
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	253
BseAI	TCCGGA	1 cut(s)	27
BseBI	CCWGG	2 cut(s)	96, 413
BseDI	CCNNGG	1 cut(s)	675
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	22
BshFI	GGCC	3 cut(s)	109, 346, 491
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	109, 346, 491
Bsp13I	TCCGGA	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	139, 299, 437
BspACI	CCGC	3 cut(s)	85, 308, 692
BspANI	GGCC	3 cut(s)	109, 346, 491
BspEI	TCCGGA	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	294, 432
BspQI	GCTCTTC	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	675
BssMI	GATC	3 cut(s)	139, 299, 437
BssSI	CACGAG	1 cut(s)	616
BssT1I	CCWWGG	1 cut(s)	675
Bst2BI	CACGAG	1 cut(s)	616
Bst2UI	CCWGG	2 cut(s)	96, 413
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	3 cut(s)	500, 639, 646
BstAPI	GCANNNNNTGC	2 cut(s)	158, 596
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	3 cut(s)	142, 302, 440
BstMBI	GATC	3 cut(s)	139, 299, 437
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 596
BstNI	CCWGG	2 cut(s)	96, 413
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	94, 411
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BsuRI	GGCC	3 cut(s)	109, 346, 491
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	129
CciI	TCATGA	1 cut(s)	808
Cfr13I	GGNCC	2 cut(s)	210, 727
Csp6I	GTAC	3 cut(s)	45, 145, 200
CviAII	CATG	4 cut(s)	128, 493, 580, 809
CviJI	RGCY	6 cut(s)	109, 266, 346, 452, 491, 703
CviKI_1	RGCY	6 cut(s)	109, 266, 346, 452, 491, 703
CviQI	GTAC	3 cut(s)	45, 145, 200
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	3 cut(s)	141, 301, 439
DpnII	GATC	3 cut(s)	139, 299, 437
DraI	TTTAAA	2 cut(s)	39, 784
EaeI	YGGCCR	2 cut(s)	344, 489
Eam1104I	CTCTTC	3 cut(s)	500, 639, 646
EarI	CTCTTC	3 cut(s)	500, 639, 646
Eco130I	CCWWGG	1 cut(s)	675
Eco32I	GATATC	1 cut(s)	802
Eco47I	GGWCC	2 cut(s)	210, 727
EcoRII	CCWGG	2 cut(s)	94, 411
EcoRV	GATATC	1 cut(s)	802
EcoT14I	CCWWGG	1 cut(s)	675
EcoT22I	ATGCAT	3 cut(s)	119, 316, 585
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	4 cut(s)	131, 496, 583, 812
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	4 cut(s)	127, 492, 579, 808
FauI	CCCGC	1 cut(s)	92
FbaI	TGATCA	1 cut(s)	139
FokI	GGATG	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	109, 346, 491
HapII	CCGG	1 cut(s)	28
Hin1II	CATG	4 cut(s)	131, 496, 583, 812
HinfI	GANTC	5 cut(s)	10, 290, 396, 508, 666
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	2 cut(s)	149, 554
Hpy188I	TCNGA	1 cut(s)	299
Hpy188III	TCNNGA	4 cut(s)	28, 379, 441, 809
Hpy99I	CGWCG	1 cut(s)	478
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	7 cut(s)	72, 117, 161, 314, 525, 583, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 596
HpyF3I	CTNAG	1 cut(s)	356
Hsp92II	CATG	4 cut(s)	131, 496, 583, 812
Kpn2I	TCCGGA	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	139, 299, 437
LguI	GCTCTTC	1 cut(s)	639
LweI	GCATC	6 cut(s)	148, 301, 323, 565, 773, 783
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	3 cut(s)	141, 301, 439
MboI	GATC	3 cut(s)	139, 299, 437
MboII	GAAGA	7 cut(s)	400, 405, 514, 517, 656, 663, 764
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	437
MlsI	TGGCCA	2 cut(s)	346, 491
MluCI	AATT	5 cut(s)	153, 188, 606, 628, 793
MluNI	TGGCCA	2 cut(s)	346, 491
MlyI	GAGTC	3 cut(s)	19, 299, 517
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	99, 117, 226, 251, 463, 478, 714
Mox20I	TGGCCA	2 cut(s)	346, 491
Mph1103I	ATGCAT	3 cut(s)	119, 316, 585
MroI	TCCGGA	1 cut(s)	27
MscI	TGGCCA	2 cut(s)	346, 491
MseI	TTAA	5 cut(s)	38, 186, 363, 783, 818
Msp20I	TGGCCA	2 cut(s)	346, 491
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	2 cut(s)	96, 413
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	2 cut(s)	96, 413
MwoI	GCNNNNNNNGC	2 cut(s)	158, 596
NdeII	GATC	3 cut(s)	139, 299, 437
NlaIII	CATG	4 cut(s)	131, 496, 583, 812
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	611
NsiI	ATGCAT	3 cut(s)	119, 316, 585
NspI	RCATGY	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	808
PciSI	GCTCTTC	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	396, 666
PfoI	TCCNGGA	1 cut(s)	411
PleI	GAGTC	3 cut(s)	18, 298, 516
PpsI	GAGTC	3 cut(s)	18, 298, 516
Psp6I	CCWGG	2 cut(s)	94, 411
PspGI	CCWGG	2 cut(s)	94, 411
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	210, 727
PsuI	RGATCY	1 cut(s)	437
RsaI	GTAC	3 cut(s)	46, 146, 201
RsaNI	GTAC	3 cut(s)	45, 145, 200
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	5 cut(s)	38, 186, 363, 783, 818
Sau3AI	GATC	3 cut(s)	139, 299, 437
Sau96I	GGNCC	2 cut(s)	210, 727
SchI	GAGTC	3 cut(s)	19, 299, 517
ScrFI	CCNGG	2 cut(s)	96, 413
SetI	ASST	7 cut(s)	64, 100, 205, 237, 268, 596, 628
SfaNI	GCATC	6 cut(s)	148, 301, 323, 565, 773, 783
SinI	GGWCC	2 cut(s)	210, 727
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	5 cut(s)	153, 188, 606, 628, 793
SsiI	CCGC	3 cut(s)	85, 308, 692
StyD4I	CCNGG	2 cut(s)	94, 411
StyI	CCWWGG	1 cut(s)	675
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	458, 798
TasI	AATT	5 cut(s)	153, 188, 606, 628, 793
TfiI	GAWTC	2 cut(s)	396, 666
Tru1I	TTAA	5 cut(s)	38, 186, 363, 783, 818
Tru9I	TTAA	5 cut(s)	38, 186, 363, 783, 818
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	611
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	5 cut(s)	335, 438, 759, 797, 825
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	210, 727
XapI	RAATTY	2 cut(s)	606, 793
XceI	RCATGY	1 cut(s)	131
Zsp2I	ATGCAT	3 cut(s)	119, 316, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.