Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

18959059 .. 18962113

Gene Structure 3055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017604

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCACCAGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGATGAGGCCAATATGCATTGGGAGGCATGCTTTCGGTGATCAGTACCGAGCAACTGATGCAATCATAAAAGGACCTGGGAAACTTAAATTAGTTTTTGCCTTTTTGGTAATAGATTATCTGCTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTAGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTGAAAATACTATTCTCAAGAAATATGATGGAAGAGTAACTGCTATAGATGATCGTTACCAGATTGGAATCTACACTGTACGTAAGATTCAATACGGTGAAGAGATCACATTGGACTACAACTCTATTAAGGAGAGTAAGGAAGAATATGAAGCATCAGATTGTTTGTGCGACAGTCAAGTTTGCCGGGGAGGTTACCTGAATTTGATAGGCGAAGGATCATTCTTGGAGGATCGAACATATGCATATGCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

216

Amino Acids

24.45

Weight (kDa)

5.37

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	22 - 145	1.6e-09	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	91, 338
AclWI	GGATC	3 cut(s)	324, 616, 630
AcoI	YGGCCR	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	592
AfaI	GTAC	3 cut(s)	52, 152, 471
AflII	CTTAAG	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	28, 271, 482
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	100, 181
AluBI	AGCT	2 cut(s)	40, 296
AluI	AGCT	2 cut(s)	40, 296
AlwI	GGATC	3 cut(s)	324, 616, 630
AoxI	GGCC	2 cut(s)	113, 374
ApoI	RAATTY	1 cut(s)	592
AspS9I	GGNCC	2 cut(s)	179, 240
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	155, 500
AvaII	GGWCC	2 cut(s)	179, 240
BalI	TGGCCA	1 cut(s)	376
BccI	CCATC	2 cut(s)	230, 413
BciT130I	CCWGG	2 cut(s)	102, 183
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	578
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	2 cut(s)	76, 435
BfrI	CTTAAG	1 cut(s)	46
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	102, 183, 578
Bme18I	GGWCC	2 cut(s)	179, 240
BmgT120I	GGNCC	2 cut(s)	179, 240
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	3 cut(s)	102, 183, 578
BmsI	GCATC	4 cut(s)	154, 331, 353, 554
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	182, 577
Bse1I	ACTGG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	458
BseBI	CCWGG	2 cut(s)	102, 183
BseDI	CCNNGG	2 cut(s)	182, 577
BseGI	GGATG	2 cut(s)	114, 346
BseJI	GATNNNNATC	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	115, 376
BsiSI	CCGG	1 cut(s)	577
BsnI	GGCC	2 cut(s)	115, 376
Bsp143I	GATC	6 cut(s)	145, 329, 442, 495, 608, 622
BspACI	CCGC	2 cut(s)	91, 338
BspANI	GGCC	2 cut(s)	115, 376
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	80
BspPI	GGATC	3 cut(s)	324, 616, 630
BspTI	CTTAAG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	182, 577
BssMI	GATC	6 cut(s)	145, 329, 442, 495, 608, 622
Bst2UI	CCWGG	2 cut(s)	102, 183
Bst4CI	ACNGT	4 cut(s)	55, 469, 488, 566
Bst6I	CTCTTC	2 cut(s)	418, 486
BstAFI	CTTAAG	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	386
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	114, 346
BstKTI	GATC	6 cut(s)	148, 332, 445, 498, 611, 625
BstMBI	GATC	6 cut(s)	145, 329, 442, 495, 608, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	102, 183
BstNSI	RCATGY	1 cut(s)	137
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	3 cut(s)	100, 181, 576
BstSFI	CTRYAG	2 cut(s)	76, 435
BstSNI	TACGTA	1 cut(s)	473
BsuRI	GGCC	2 cut(s)	115, 376
BtsCI	GGATG	2 cut(s)	114, 346
BtsIMutI	CAGTG	4 cut(s)	15, 312, 390, 465
Cac8I	GCNNGC	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	179, 240
Csp6I	GTAC	3 cut(s)	51, 151, 470
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	4 cut(s)	40, 115, 296, 376
CviKI_1	RGCY	4 cut(s)	40, 115, 296, 376
CviQI	GTAC	3 cut(s)	51, 151, 470
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	6 cut(s)	147, 331, 444, 497, 610, 624
DpnII	GATC	6 cut(s)	145, 329, 442, 495, 608, 622
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	2 cut(s)	418, 486
EarI	CTCTTC	2 cut(s)	418, 486
Eco105I	TACGTA	1 cut(s)	473
Eco47I	GGWCC	2 cut(s)	179, 240
Eco91I	GGTNACC	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	100, 181
EcoT22I	ATGCAT	3 cut(s)	125, 346, 637
FaeI	CATG	1 cut(s)	137
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	98
FauNDI	CATATG	2 cut(s)	631, 637
FbaI	TGATCA	1 cut(s)	145
FokI	GGATG	2 cut(s)	121, 353
FspBI	CTAG	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	115, 376
HapII	CCGG	1 cut(s)	577
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	4 cut(s)	17, 320, 459, 478
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	2 cut(s)	155, 500
Hpy188I	TCNGA	2 cut(s)	329, 550
Hpy188III	TCNNGA	1 cut(s)	409
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	4 cut(s)	55, 469, 488, 566
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	6 cut(s)	34, 78, 123, 167, 344, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	6 cut(s)	145, 329, 442, 495, 608, 622
LweI	GCATC	4 cut(s)	154, 331, 353, 554
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	4 cut(s)	18, 427, 446, 584
MalI	GATC	6 cut(s)	147, 331, 444, 497, 610, 624
MboI	GATC	6 cut(s)	145, 329, 442, 495, 608, 622
MboII	GAAGA	3 cut(s)	435, 503, 545
MfeI	CAATTG	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	376
MluCI	AATT	3 cut(s)	23, 194, 592
MluNI	TGGCCA	1 cut(s)	376
MlyI	GAGTC	2 cut(s)	26, 329
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	6 cut(s)	105, 123, 256, 281, 575, 613
Mox20I	TGGCCA	1 cut(s)	376
Mph1103I	ATGCAT	3 cut(s)	125, 346, 637
MscI	TGGCCA	1 cut(s)	376
MseI	TTAA	3 cut(s)	47, 192, 519
Msp20I	TGGCCA	1 cut(s)	376
MspCI	CTTAAG	1 cut(s)	46
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	3 cut(s)	102, 183, 578
MunI	CAATTG	1 cut(s)	23
MvaI	CCWGG	2 cut(s)	102, 183
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	578
NdeI	CATATG	2 cut(s)	631, 637
NdeII	GATC	6 cut(s)	145, 329, 442, 495, 608, 622
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	18
NsiI	ATGCAT	3 cut(s)	125, 346, 637
NspI	RCATGY	1 cut(s)	137
PaeI	GCATGC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	459, 478
PleI	GAGTC	2 cut(s)	25, 328
PpsI	GAGTC	2 cut(s)	25, 328
Ppu21I	YACGTR	1 cut(s)	473
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	100, 181
PspEI	GGTNACC	1 cut(s)	584
PspGI	CCWGG	2 cut(s)	100, 181
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	2 cut(s)	179, 240
PspPPI	RGGWCCY	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	80
RsaI	GTAC	3 cut(s)	52, 152, 471
RsaNI	GTAC	3 cut(s)	51, 151, 470
SaqAI	TTAA	3 cut(s)	47, 192, 519
Sau3AI	GATC	6 cut(s)	145, 329, 442, 495, 608, 622
Sau96I	GGNCC	2 cut(s)	179, 240
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	2 cut(s)	26, 329
ScrFI	CCNGG	3 cut(s)	102, 183, 578
SfaNI	GCATC	4 cut(s)	154, 331, 353, 554
SfcI	CTRYAG	2 cut(s)	76, 435
SinI	GGWCC	2 cut(s)	179, 240
SmlI	CTYRAG	2 cut(s)	46, 407
SmoI	CTYRAG	2 cut(s)	46, 407
SnaBI	TACGTA	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	278
SphI	GCATGC	1 cut(s)	137
Sse9I	AATT	3 cut(s)	23, 194, 592
SsiI	CCGC	2 cut(s)	91, 338
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	100, 181, 576
TaaI	ACNGT	4 cut(s)	55, 469, 488, 566
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	625
TasI	AATT	3 cut(s)	23, 194, 592
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	459, 478
Tru1I	TTAA	3 cut(s)	47, 192, 519
Tru9I	TTAA	3 cut(s)	47, 192, 519
TscAI	CASTG	4 cut(s)	15, 319, 397, 472
TseFI	GTSAC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	365, 555
TspRI	CASTG	4 cut(s)	15, 319, 397, 472
Vha464I	CTTAAG	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	179, 240
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	279
ZrmI	AGTACT	1 cut(s)	52
Zsp2I	ATGCAT	3 cut(s)	125, 346, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.