Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

17526076 .. 17530664

Gene Structure 4589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCACAACAACAAAAAAGTATGACAGTAGACGAAACTCGTTCCTCTGATTCTCACTCGCTAAAACCCCCAAGTTTTTGCTGTTTTGCTCTGAGCCGAGAAATGGAGGCATTCAATAAGATCAAGGTGACCAACCCAATTGTCGAAATGGATGGAGATGAAATGACTCGAATTTTCTGGAAATCTATAAAAGATAAGCTTATTTTGCCCTTTCTGGAACTGGATATCAAGTACTTTGATCTTGGCCTCCCTAATCGTGATGCCACCAGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTCAAGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACGAGGCCAATATGCATTGGGAGGCATGCTTTCGGTGATCAGTACCGAGCAACTGATGCAATCATAAAAGGACCTGGGAAACTTAAATTAGTTTTTGTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCTGAAGGGATTTGGTATGAACACCGTCTTATTGACGATATGGTTGCATATGCTCTTAAAAGTGAAGGAGGTTATGTATGGGCATGCAAAAATTATGATGGGGATGTGCAAAGTGACTTGGTAGCACAAGGTTTTGGATCTCTGGGTCTGATGACATCTATACTGGTGTGCCCAGATGGAAAGACCATTGAAGCTGAAGCAGCCCATGGTACAGTTACCCGCCATTACCGGGTTCACCAAAAAGGAGGTGAAACCAGCACAAACAGCATAGCTTCTATCTTTGCTTGGTCACGAGGTCTTGCACACAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

381

Amino Acids

43.26

Weight (kDa)

8.05

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	42 - 380	9.3e-69	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	30
AccIII	TCCGGA	1 cut(s)	408
AciI	CCGC	3 cut(s)	466, 689, 1051
AclWI	GGATC	3 cut(s)	675, 813, 976
AcoI	YGGCCR	1 cut(s)	725
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	2 cut(s)	855, 1047
AfaI	GTAC	6 cut(s)	233, 311, 427, 527, 582, 1042
AfiI	CCNNNNNNNGG	2 cut(s)	103, 1060
AgsI	TTSAA	8 cut(s)	115, 287, 370, 376, 622, 781, 830, 1022
AjnI	CCWGG	3 cut(s)	475, 556, 792
AluBI	AGCT	6 cut(s)	199, 299, 647, 833, 1025, 1103
AluI	AGCT	6 cut(s)	199, 299, 647, 833, 1025, 1103
AlwI	GGATC	3 cut(s)	675, 813, 976
Aor13HI	TCCGGA	1 cut(s)	408
AoxI	GGCC	3 cut(s)	244, 488, 725
ApeKI	GCWGC	1 cut(s)	1031
ApoI	RAATTY	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	554, 591
AsuC2I	CCSGG	1 cut(s)	1061
AsuHPI	GGTGA	4 cut(s)	139, 530, 1058, 1091
AvaII	GGWCC	2 cut(s)	554, 591
BaeGI	GKGCMC	1 cut(s)	1004
BalI	TGGCCA	1 cut(s)	727
BauI	CACGAG	2 cut(s)	354, 1122
BbvI	GCAGC	1 cut(s)	1043
BccI	CCATC	5 cut(s)	146, 581, 764, 923, 1001
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	3 cut(s)	477, 558, 794
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	1061
BfmI	CTRYAG	1 cut(s)	451
BisI	GCNGC	1 cut(s)	1032
BlsI	GCNGC	1 cut(s)	1033
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	4 cut(s)	477, 558, 794, 1061
Bme18I	GGWCC	2 cut(s)	554, 591
BmgT120I	GGNCC	2 cut(s)	554, 591
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	4 cut(s)	477, 558, 794, 1061
BmsI	GCATC	4 cut(s)	250, 529, 682, 704
BpmI	CTGGAG	1 cut(s)	657
BpuEI	CTTGAG	2 cut(s)	290, 743
BpuMI	CCSGG	1 cut(s)	1061
BsaJI	CCNNGG	2 cut(s)	557, 1036
BsaWI	WCCGGW	1 cut(s)	408
BsaXI	ACNNNNNCTCC	4 cut(s)	325, 355, 891, 921
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 1060
Bse1I	ACTGG	4 cut(s)	225, 267, 634, 999
BseAI	TCCGGA	1 cut(s)	408
BseBI	CCWGG	3 cut(s)	477, 558, 794
BseDI	CCNNGG	2 cut(s)	557, 1036
BseGI	GGATG	3 cut(s)	157, 697, 940
BseLI	CCNNNNNNNGG	2 cut(s)	103, 1060
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	4 cut(s)	225, 267, 634, 999
BseRI	GAGGAG	1 cut(s)	403
BseSI	GKGCMC	1 cut(s)	1004
BseXI	GCAGC	1 cut(s)	1043
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	246, 490, 727
BsiSI	CCGG	2 cut(s)	409, 1060
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	103, 1060
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	3 cut(s)	246, 490, 727
Bsp1286I	GDGCHC	1 cut(s)	1004
Bsp13I	TCCGGA	1 cut(s)	408
Bsp143I	GATC	6 cut(s)	120, 238, 520, 680, 818, 968
Bsp19I	CCATGG	1 cut(s)	1036
BspACI	CCGC	3 cut(s)	466, 689, 1051
BspANI	GGCC	3 cut(s)	246, 490, 727
BspCNI	CTCAG	1 cut(s)	84
BspEI	TCCGGA	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	592
BspMAI	CTGCAG	1 cut(s)	455
BspPI	GGATC	3 cut(s)	675, 813, 976
BsrI	ACTGG	4 cut(s)	225, 267, 634, 999
BssECI	CCNNGG	2 cut(s)	557, 1036
BssMI	GATC	6 cut(s)	120, 238, 520, 680, 818, 968
BssSI	CACGAG	2 cut(s)	354, 1122
BssT1I	CCWWGG	1 cut(s)	1036
Bst2BI	CACGAG	2 cut(s)	354, 1122
Bst2UI	CCWGG	3 cut(s)	477, 558, 794
Bst4CI	ACNGT	4 cut(s)	28, 430, 857, 1045
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	510, 916
BstDEI	CTNAG	2 cut(s)	92, 737
BstDSI	CCRYGG	1 cut(s)	1036
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	3 cut(s)	157, 697, 940
BstKTI	GATC	6 cut(s)	123, 241, 523, 683, 821, 971
BstMBI	GATC	6 cut(s)	120, 238, 520, 680, 818, 968
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 539, 1031, 1095
BstNI	CCWGG	3 cut(s)	477, 558, 794
BstNSI	RCATGY	2 cut(s)	512, 918
BstPI	GGTNACC	1 cut(s)	127
BstSCI	CCNGG	4 cut(s)	475, 556, 792, 1059
BstSFI	CTRYAG	1 cut(s)	451
BstSLI	GKGCMC	1 cut(s)	1004
BstV1I	GCAGC	1 cut(s)	1043
BstX2I	RGATCY	2 cut(s)	818, 968
BstYI	RGATCY	2 cut(s)	818, 968
BsuRI	GGCC	3 cut(s)	246, 490, 727
BtgI	CCRYGG	1 cut(s)	1036
BtsCI	GGATG	3 cut(s)	157, 697, 940
BtsIMutI	CAGTG	2 cut(s)	274, 663
Cac8I	GCNNGC	2 cut(s)	510, 916
Cfr13I	GGNCC	2 cut(s)	554, 591
Csp6I	GTAC	6 cut(s)	232, 310, 426, 526, 581, 1041
CviAII	CATG	3 cut(s)	509, 915, 1037
CviQI	GTAC	6 cut(s)	232, 310, 426, 526, 581, 1041
DdeI	CTNAG	2 cut(s)	92, 737
DpnI	GATC	6 cut(s)	122, 240, 522, 682, 820, 970
DpnII	GATC	6 cut(s)	120, 238, 520, 680, 818, 968
DraI	TTTAAA	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	725
Eco130I	CCWWGG	1 cut(s)	1036
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	554, 591
Eco57I	CTGAAG	2 cut(s)	855, 1047
Eco91I	GGTNACC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	127
EcoRII	CCWGG	3 cut(s)	475, 556, 792
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	1036
EcoT22I	ATGCAT	2 cut(s)	500, 697
ErhI	CCWWGG	1 cut(s)	1036
FaeI	CATG	3 cut(s)	512, 918, 1040
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 773, 805
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	3 cut(s)	508, 914, 1036
FauI	CCCGC	2 cut(s)	473, 1058
FauNDI	CATATG	1 cut(s)	880
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	1032
FokI	GGATG	3 cut(s)	164, 704, 947
Fsp4HI	GCNGC	1 cut(s)	1032
GluI	GCNGC	1 cut(s)	1032
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	3 cut(s)	246, 490, 727
HapII	CCGG	2 cut(s)	409, 1060
Hin1II	CATG	3 cut(s)	512, 918, 1040
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	6 cut(s)	50, 166, 276, 391, 671, 777
HpaII	CCGG	2 cut(s)	409, 1060
HphI	GGTGA	4 cut(s)	139, 530, 1058, 1091
Hpy166II	GTNNAC	2 cut(s)	31, 1066
Hpy188I	TCNGA	4 cut(s)	49, 93, 680, 981
Hpy188III	TCNNGA	8 cut(s)	178, 215, 257, 344, 409, 760, 822, 1122
Hpy8I	GTNNAC	2 cut(s)	31, 1066
HpyAV	CCTTC	2 cut(s)	830, 890
HpyCH4III	ACNGT	4 cut(s)	28, 430, 857, 1045
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 539, 1031, 1095
HpyF3I	CTNAG	2 cut(s)	92, 737
Hsp92II	CATG	3 cut(s)	512, 918, 1040
Kpn2I	TCCGGA	1 cut(s)	408
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	6 cut(s)	120, 238, 520, 680, 818, 968
Lsp1109I	GCAGC	1 cut(s)	1043
LweI	GCATC	4 cut(s)	250, 529, 682, 704
MaeIII	GTNAC	6 cut(s)	3, 127, 277, 944, 1045, 1119
MalI	GATC	6 cut(s)	122, 240, 522, 682, 820, 970
MboI	GATC	6 cut(s)	120, 238, 520, 680, 818, 968
MboII	GAAGA	2 cut(s)	781, 786
MfeI	CAATTG	2 cut(s)	138, 282
MflI	RGATCY	2 cut(s)	818, 968
MhlI	GDGCHC	1 cut(s)	1004
MlsI	TGGCCA	1 cut(s)	727
MluCI	AATT	5 cut(s)	138, 171, 282, 569, 922
MluNI	TGGCCA	1 cut(s)	727
MlyI	GAGTC	4 cut(s)	160, 285, 400, 680
MmeI	TCCRAC	1 cut(s)	461
Mox20I	TGGCCA	1 cut(s)	727
Mph1103I	ATGCAT	2 cut(s)	500, 697
MroI	TCCGGA	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	727
MseI	TTAA	4 cut(s)	360, 419, 567, 888
Msp20I	TGGCCA	1 cut(s)	727
MspI	CCGG	2 cut(s)	409, 1060
MspR9I	CCNGG	4 cut(s)	477, 558, 794, 1061
MunI	CAATTG	2 cut(s)	138, 282
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	3 cut(s)	477, 558, 794
MwoI	GCNNNNNNNGC	4 cut(s)	205, 539, 1031, 1095
NciI	CCSGG	1 cut(s)	1061
NcoI	CCATGG	1 cut(s)	1036
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	6 cut(s)	120, 238, 520, 680, 818, 968
NlaIII	CATG	3 cut(s)	512, 918, 1040
NlaIV	GGNNCC	1 cut(s)	592
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	5 cut(s)	3, 127, 277, 944, 1119
NsiI	ATGCAT	2 cut(s)	500, 697
NspI	RCATGY	2 cut(s)	512, 918
PaeI	GCATGC	2 cut(s)	512, 918
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	50, 777
PfoI	TCCNGGA	1 cut(s)	792
PkrI	GCNGC	1 cut(s)	1033
PleI	GAGTC	4 cut(s)	160, 284, 399, 679
PpsI	GAGTC	4 cut(s)	160, 284, 399, 679
PpuMI	RGGWCCY	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	554
Psp6I	CCWGG	3 cut(s)	475, 556, 792
PspEI	GGTNACC	1 cut(s)	127
PspGI	CCWGG	3 cut(s)	475, 556, 792
PspN4I	GGNNCC	1 cut(s)	592
PspPI	GGNCC	2 cut(s)	554, 591
PspPPI	RGGWCCY	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	455
PsuI	RGATCY	2 cut(s)	818, 968
RsaI	GTAC	6 cut(s)	233, 311, 427, 527, 582, 1042
RsaNI	GTAC	6 cut(s)	232, 310, 426, 526, 581, 1041
SaqAI	TTAA	4 cut(s)	360, 419, 567, 888
SatI	GCNGC	1 cut(s)	1032
Sau3AI	GATC	6 cut(s)	120, 238, 520, 680, 818, 968
Sau96I	GGNCC	2 cut(s)	554, 591
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	4 cut(s)	160, 285, 400, 680
ScrFI	CCNGG	4 cut(s)	477, 558, 794, 1061
SduI	GDGCHC	1 cut(s)	1004
SfaNI	GCATC	4 cut(s)	250, 529, 682, 704
SfcI	CTRYAG	1 cut(s)	451
SinI	GGWCC	2 cut(s)	554, 591
SmlI	CTYRAG	2 cut(s)	305, 758
SmoI	CTYRAG	2 cut(s)	305, 758
SphI	GCATGC	2 cut(s)	512, 918
Sse9I	AATT	5 cut(s)	138, 171, 282, 569, 922
SsiI	CCGC	3 cut(s)	466, 689, 1051
StyD4I	CCNGG	4 cut(s)	475, 556, 792, 1059
StyI	CCWWGG	1 cut(s)	1036
TaaI	ACNGT	4 cut(s)	28, 430, 857, 1045
TaqI	TCGA	2 cut(s)	144, 169
TasI	AATT	5 cut(s)	138, 171, 282, 569, 922
TatI	WGTACW	2 cut(s)	231, 309
TfiI	GAWTC	2 cut(s)	50, 777
Tru1I	TTAA	4 cut(s)	360, 419, 567, 888
Tru9I	TTAA	4 cut(s)	360, 419, 567, 888
TscAI	CASTG	2 cut(s)	274, 670
TseFI	GTSAC	5 cut(s)	3, 127, 277, 944, 1119
TseI	GCWGC	1 cut(s)	1031
Tsp45I	GTSAC	5 cut(s)	3, 127, 277, 944, 1119
TspDTI	ATGAA	5 cut(s)	174, 363, 716, 819, 864
TspRI	CASTG	2 cut(s)	274, 670
VpaK11BI	GGWCC	2 cut(s)	554, 591
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	2 cut(s)	512, 918
XmiI	GTMKAC	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	233
Zsp2I	ATGCAT	2 cut(s)	500, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.