MD05G1241100.v1.1

Belongs to the isocitrate and isopropylmalate dehydrogenases family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
37168475 .. 37172789
4315 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1241100.v1.1.491

Sequence Viewer

Length: 1254 bp
ATGGAGGCCTTCGATAAGATCAAGGTGACCAACCCAATCGTCGAAATGGACGGAGATGAAATGACTCGGGTGTTCTGGAAATGGATTAAAGACAAGCTTATCTTTCCCTTTCTGGAGTTGGATATCAAGTACTTTGATCTCGGGATCCTTAATCGTGATGCCACCAGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTTGCAATAAAGTGTGCAACCATAACTCCTGATGAAACTCGTGTGAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAACGGGACAATACGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGTCTTGTTCCAGGTTGGACAATGCCAATATGTATCGGGAGACATGCTTTTGGTGATCAGTACCGAGCAACTGATGCAATCATAGAAGGACCTGGAAAACTTAAAATGGTTTTTGTACCTGATGGGTCCAATGAGAAGACAGAGTGGGAGGTTTACAAATTTACTGGCGCAGGAGGCATAGCTTTGTCCATGTATAACACAGATGAGTCTATCCGAGCTTTTGCTGAGGCTTCCATGAACACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTGAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAGCTCATTGGAGATCAAGATATGAGGCTGCAGGGATTTGGTATGAACACCGTCTTATTGACGATATGGTTGCCTATGCTCTCAAAAGTGAGGGAGGTTATGTTTGGGCATGCAAAAACTATGATGGGGATGTGCAAAGTGACTTCTTGGCCCAAGGTTTTGGATCTCTGGGGCTGATGACATCTATACTGGTGTGCCCAGATGGAAAGACCATTGAAGCTGAAGCAGCCCATGGTACAGTAACCCGCCATTACCGGGTCCACCAGAAGGGAGGCGAAACAAGCACAAACAGCATAGCTTCGATCTTTGCATGGTCACGAGGTCTTGCACACAGGGCAAAGTTAGATGGCAATGCCAGACTCTTGGATTTTACAGAGAAACTTGAAGCATCTTGCGTAGGAACTGTCGAATCTGGGAAGATGACCAAGGATCTTGCACTCCTCATCCATGGGCCTAAGGTCACTAGGTCTCAGTATCTGAATACCGAAGAATTTATAGACGCCGTGGCTGATGAGTTGAGAGTTAGATTGTCTAGCAGAGCAAAGTTGTAA

Protein Analysis

418

Amino Acids

47.23

Weight (kDa)

7.08

Isoelectric Point (pI)

25.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 8 - 403 7.7e-78 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 949
AclWI GGATC 4 cut(s) 139, 152, 874, 1140
AcoI YGGCCR 1 cut(s) 623
AcsI RAATTY 2 cut(s) 521, 1193
AcuI CTGAAG 2 cut(s) 677, 945
AcyI GRCGYC 1 cut(s) 1203
AfaI GTAC 6 cut(s) 131, 209, 325, 425, 480, 940
AfiI CCNNNNNNNGG 2 cut(s) 958, 970
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 6 cut(s) 185, 268, 274, 679, 920, 1088
AjnI CCWGG 3 cut(s) 373, 454, 690
AluBI AGCT 7 cut(s) 97, 197, 545, 581, 707, 923, 1001
AluI AGCT 7 cut(s) 97, 197, 545, 581, 707, 923, 1001
Alw26I GTCTC 2 cut(s) 397, 1176
AlwI GGATC 4 cut(s) 139, 152, 874, 1140
AlwNI CAGNNNCTG 1 cut(s) 1180
Ama87I CYCGRG 2 cut(s) 66, 140
AoxI GGCC 4 cut(s) 6, 623, 852, 1154
ApeKI GCWGC 2 cut(s) 731, 929
ApoI RAATTY 2 cut(s) 521, 1193
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 5 cut(s) 452, 489, 853, 961, 1154
AsuC2I CCSGG 1 cut(s) 959
AsuHPI GGTGA 2 cut(s) 37, 428
AvaI CYCGRG 2 cut(s) 66, 140
AvaII GGWCC 3 cut(s) 452, 489, 961
AxyI CCTNAGG 1 cut(s) 1158
BaeGI GKGCMC 1 cut(s) 902
BalI TGGCCA 1 cut(s) 625
BamHI GGATCC 1 cut(s) 144
BauI CACGAG 2 cut(s) 252, 1020
BbsI GAAGAC 1 cut(s) 506
BbvCI CCTCAGC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 718, 941
BccI CCATC 5 cut(s) 479, 662, 821, 899, 1043
BceAI ACGGC 1 cut(s) 1190
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BciT130I CCWGG 3 cut(s) 375, 456, 692
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 1 cut(s) 959
BcoDI GTCTC 2 cut(s) 397, 1176
BfaI CTAG 2 cut(s) 1167, 1236
BfmI CTRYAG 2 cut(s) 349, 732
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 2 cut(s) 732, 930
BlsI GCNGC 2 cut(s) 733, 931
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 4 cut(s) 375, 456, 692, 959
Bme18I GGWCC 3 cut(s) 452, 489, 961
BmeT110I CYCGRG 2 cut(s) 66, 140
BmgT120I GGNCC 5 cut(s) 452, 489, 853, 961, 1154
BmiI GGNNCC 3 cut(s) 146, 490, 962
BmrFI CCNGG 4 cut(s) 375, 456, 692, 959
BmsI GCATC 3 cut(s) 148, 427, 1100
BpiI GAAGAC 1 cut(s) 506
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 959
BsaHI GRCGYC 1 cut(s) 1203
BsaI GGTCTC 1 cut(s) 1176
BsaJI CCNNGG 5 cut(s) 856, 934, 1128, 1150, 1206
BsaXI ACNNNNNCTCC 4 cut(s) 223, 253, 789, 819
Bsc4I CCNNNNNNNGG 2 cut(s) 958, 970
Bse1I ACTGG 3 cut(s) 165, 532, 897
Bse21I CCTNAGG 1 cut(s) 1158
Bse3DI GCAATG 1 cut(s) 1060
BseBI CCWGG 3 cut(s) 375, 456, 692
BseDI CCNNGG 5 cut(s) 856, 934, 1128, 1150, 1206
BseGI GGATG 2 cut(s) 838, 1146
BseLI CCNNNNNNNGG 2 cut(s) 958, 970
BseMI GCAATG 1 cut(s) 1060
BseMII CTCAG 2 cut(s) 579, 1187
BseNI ACTGG 3 cut(s) 165, 532, 897
BseRI GAGGAG 2 cut(s) 301, 1133
BseSI GKGCMC 1 cut(s) 902
BseXI GCAGC 2 cut(s) 718, 941
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 4 cut(s) 8, 625, 854, 1156
BsiHKCI CYCGRG 2 cut(s) 66, 140
BsiSI CCGG 1 cut(s) 958
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 958, 970
BsmAI GTCTC 2 cut(s) 397, 1176
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 4 cut(s) 8, 625, 854, 1156
Bso31I GGTCTC 1 cut(s) 1176
BsoBI CYCGRG 2 cut(s) 66, 140
Bsp1286I GDGCHC 1 cut(s) 902
Bsp143I GATC 8 cut(s) 18, 136, 144, 418, 716, 866, 1005, 1132
Bsp19I CCATGG 2 cut(s) 934, 1150
BspACI CCGC 1 cut(s) 949
BspANI GGCC 4 cut(s) 8, 625, 854, 1156
BspCNI CTCAG 2 cut(s) 580, 1186
BspLI GGNNCC 3 cut(s) 146, 490, 962
BspMAI CTGCAG 2 cut(s) 353, 736
BspPI GGATC 4 cut(s) 139, 152, 874, 1140
BspTI CTTAAG 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 1176
BsrDI GCAATG 1 cut(s) 1060
BsrI ACTGG 3 cut(s) 165, 532, 897
BssECI CCNNGG 5 cut(s) 856, 934, 1128, 1150, 1206
BssMI GATC 8 cut(s) 18, 136, 144, 418, 716, 866, 1005, 1132
BssNI GRCGYC 1 cut(s) 1203
BssSI CACGAG 2 cut(s) 252, 1020
BssT1I CCWWGG 4 cut(s) 856, 934, 1128, 1150
Bst2BI CACGAG 2 cut(s) 252, 1020
Bst2UI CCWGG 3 cut(s) 375, 456, 692
Bst4CI ACNGT 4 cut(s) 328, 755, 943, 1108
BstACI GRCGYC 1 cut(s) 1203
BstAFI CTTAAG 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 814
BstDEI CTNAG 4 cut(s) 588, 635, 1158, 1173
BstDSI CCRYGG 3 cut(s) 934, 1150, 1206
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 2 cut(s) 838, 1146
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 8 cut(s) 21, 139, 147, 421, 719, 869, 1008, 1135
BstMAI GTCTC 2 cut(s) 397, 1176
BstMBI GATC 8 cut(s) 18, 136, 144, 418, 716, 866, 1005, 1132
BstMWI GCNNNNNNNGC 6 cut(s) 437, 537, 929, 984, 993, 1037
BstNI CCWGG 3 cut(s) 375, 456, 692
BstNSI RCATGY 2 cut(s) 410, 816
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 4 cut(s) 373, 454, 690, 957
BstSFI CTRYAG 2 cut(s) 349, 732
BstSLI GKGCMC 1 cut(s) 902
BstV1I GCAGC 2 cut(s) 718, 941
BstV2I GAAGAC 1 cut(s) 506
BstX2I RGATCY 3 cut(s) 144, 866, 1132
BstXI CCANNNNNNTGG 2 cut(s) 863, 1066
BstYI RGATCY 3 cut(s) 144, 866, 1132
Bsu36I CCTNAGG 1 cut(s) 1158
BsuRI GGCC 4 cut(s) 8, 625, 854, 1156
BtgI CCRYGG 3 cut(s) 934, 1150, 1206
BtsCI GGATG 2 cut(s) 838, 1146
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 2 cut(s) 172, 603
Cac8I GCNNGC 1 cut(s) 814
CaiI CAGNNNCTG 1 cut(s) 1180
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 5 cut(s) 452, 489, 853, 961, 1154
CseI GACGC 1 cut(s) 1211
Csp6I GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
CviAII CATG 7 cut(s) 407, 553, 598, 813, 935, 1014, 1151
CviQI GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
DdeI CTNAG 4 cut(s) 588, 635, 1158, 1173
DpnI GATC 8 cut(s) 20, 138, 146, 420, 718, 868, 1007, 1134
DpnII GATC 8 cut(s) 18, 136, 144, 418, 716, 866, 1005, 1132
DraI TTTAAA 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 623
Eco130I CCWWGG 4 cut(s) 856, 934, 1128, 1150
Eco147I AGGCCT 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 1176
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 3 cut(s) 452, 489, 961
Eco57I CTGAAG 2 cut(s) 677, 945
Eco81I CCTNAGG 1 cut(s) 1158
Eco88I CYCGRG 2 cut(s) 66, 140
Eco91I GGTNACC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 3 cut(s) 373, 454, 690
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 4 cut(s) 856, 934, 1128, 1150
ErhI CCWWGG 4 cut(s) 856, 934, 1128, 1150
FaeI CATG 7 cut(s) 410, 556, 601, 816, 938, 1017, 1154
FalI AAGNNNNNCTT 8 cut(s) 81, 113, 86, 118, 186, 218, 671, 703
FaqI GGGAC 1 cut(s) 313
FatI CATG 7 cut(s) 406, 552, 597, 812, 934, 1013, 1150
FauI CCCGC 1 cut(s) 956
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 732, 930
FokI GGATG 2 cut(s) 845, 1133
Fsp4HI GCNGC 2 cut(s) 732, 930
FspBI CTAG 2 cut(s) 1167, 1236
GlaI GCGC 1 cut(s) 532
GluI GCNGC 2 cut(s) 732, 930
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 4 cut(s) 8, 625, 854, 1156
HapII CCGG 1 cut(s) 958
HgaI GACGC 1 cut(s) 1211
HhaI GCGC 1 cut(s) 533
Hin1I GRCGYC 1 cut(s) 1203
Hin1II CATG 7 cut(s) 410, 556, 601, 816, 938, 1017, 1154
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 7 cut(s) 64, 174, 289, 569, 675, 1062, 1112
HpaII CCGG 1 cut(s) 958
HphI GGTGA 2 cut(s) 37, 428
Hpy166II GTNNAC 2 cut(s) 517, 964
Hpy188I TCNGA 3 cut(s) 578, 657, 1182
Hpy188III TCNNGA 8 cut(s) 76, 113, 142, 155, 242, 400, 720, 1020
Hpy8I GTNNAC 2 cut(s) 517, 964
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 19, 253, 443, 964
HpyCH4III ACNGT 4 cut(s) 328, 755, 943, 1108
HpyF10VI GCNNNNNNNGC 6 cut(s) 437, 537, 929, 984, 993, 1037
HpyF3I CTNAG 4 cut(s) 588, 635, 1158, 1173
Hsp92I GRCGYC 1 cut(s) 1203
Hsp92II CATG 7 cut(s) 410, 556, 601, 816, 938, 1017, 1154
HspAI GCGC 1 cut(s) 531
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 8 cut(s) 18, 136, 144, 418, 716, 866, 1005, 1132
Lsp1109I GCAGC 2 cut(s) 718, 941
LweI GCATC 3 cut(s) 148, 427, 1100
MaeI CTAG 2 cut(s) 1167, 1236
MaeIII GTNAC 6 cut(s) 25, 175, 842, 943, 1017, 1162
MalI GATC 8 cut(s) 20, 138, 146, 420, 718, 868, 1007, 1134
MboI GATC 8 cut(s) 18, 136, 144, 418, 716, 866, 1005, 1132
MboII GAAGA 6 cut(s) 511, 670, 679, 684, 1132, 1202
MfeI CAATTG 1 cut(s) 180
MflI RGATCY 3 cut(s) 144, 866, 1132
MhlI GDGCHC 1 cut(s) 902
MlsI TGGCCA 1 cut(s) 625
MluCI AATT 3 cut(s) 180, 521, 1193
MluNI TGGCCA 1 cut(s) 625
MlyI GAGTC 5 cut(s) 58, 183, 298, 578, 1056
MmeI TCCRAC 2 cut(s) 99, 359
Mox20I TGGCCA 1 cut(s) 625
MroXI GAANNNNTTC 1 cut(s) 263
MscI TGGCCA 1 cut(s) 625
MseI TTAA 5 cut(s) 87, 150, 204, 317, 465
Msp20I TGGCCA 1 cut(s) 625
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 1 cut(s) 958
MspR9I CCNGG 4 cut(s) 375, 456, 692, 959
MunI CAATTG 1 cut(s) 180
MvaI CCWGG 3 cut(s) 375, 456, 692
MwoI GCNNNNNNNGC 6 cut(s) 437, 537, 929, 984, 993, 1037
NciI CCSGG 1 cut(s) 959
NcoI CCATGG 2 cut(s) 934, 1150
NdeII GATC 8 cut(s) 18, 136, 144, 418, 716, 866, 1005, 1132
NlaIII CATG 7 cut(s) 410, 556, 601, 816, 938, 1017, 1154
NlaIV GGNNCC 3 cut(s) 146, 490, 962
NmuCI GTSAC 5 cut(s) 25, 175, 842, 1017, 1162
NspI RCATGY 2 cut(s) 410, 816
PaeI GCATGC 1 cut(s) 816
PceI AGGCCT 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 675, 1112
PfoI TCCNGGA 1 cut(s) 690
PkrI GCNGC 2 cut(s) 733, 931
PleI GAGTC 5 cut(s) 58, 182, 297, 577, 1056
PpsI GAGTC 5 cut(s) 58, 182, 297, 577, 1056
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 3 cut(s) 373, 454, 690
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 3 cut(s) 373, 454, 690
PspN4I GGNNCC 3 cut(s) 146, 490, 962
PspPI GGNCC 5 cut(s) 452, 489, 853, 961, 1154
PspPPI RGGWCCY 1 cut(s) 452
PsrI GAACNNNNNNTAC 2 cut(s) 593, 625
PstI CTGCAG 2 cut(s) 353, 736
PstNI CAGNNNCTG 1 cut(s) 1180
PsuI RGATCY 3 cut(s) 144, 866, 1132
RsaI GTAC 6 cut(s) 131, 209, 325, 425, 480, 940
RsaNI GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
SaqAI TTAA 5 cut(s) 87, 150, 204, 317, 465
SatI GCNGC 2 cut(s) 732, 930
Sau3AI GATC 8 cut(s) 18, 136, 144, 418, 716, 866, 1005, 1132
Sau96I GGNCC 5 cut(s) 452, 489, 853, 961, 1154
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 5 cut(s) 58, 183, 298, 578, 1056
ScrFI CCNGG 4 cut(s) 375, 456, 692, 959
SduI GDGCHC 1 cut(s) 902
SfaNI GCATC 3 cut(s) 148, 427, 1100
SfcI CTRYAG 2 cut(s) 349, 732
SinI GGWCC 3 cut(s) 452, 489, 961
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SphI GCATGC 1 cut(s) 816
Sse9I AATT 3 cut(s) 180, 521, 1193
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 1 cut(s) 949
SspMI CTAG 2 cut(s) 1167, 1236
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 373, 454, 690, 957
StyI CCWWGG 4 cut(s) 856, 934, 1128, 1150
TaaI ACNGT 4 cut(s) 328, 755, 943, 1108
TaqI TCGA 4 cut(s) 12, 42, 1004, 1110
TasI AATT 3 cut(s) 180, 521, 1193
TatI WGTACW 2 cut(s) 129, 207
TfiI GAWTC 2 cut(s) 675, 1112
Tru1I TTAA 5 cut(s) 87, 150, 204, 317, 465
Tru9I TTAA 5 cut(s) 87, 150, 204, 317, 465
TscAI CASTG 2 cut(s) 172, 610
TseFI GTSAC 5 cut(s) 25, 175, 842, 1017, 1162
TseI GCWGC 2 cut(s) 731, 929
Tsp45I GTSAC 5 cut(s) 25, 175, 842, 1017, 1162
TspDTI ATGAA 5 cut(s) 72, 261, 614, 717, 762
TspGWI ACGGA 2 cut(s) 66, 322
TspRI CASTG 2 cut(s) 172, 610
Vha464I CTTAAG 1 cut(s) 203
VpaK11BI GGWCC 3 cut(s) 452, 489, 961
XapI RAATTY 2 cut(s) 521, 1193
XceI RCATGY 2 cut(s) 410, 816
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 2 cut(s) 1167, 1236
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.