Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

6530385 .. 6530864

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0075900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATGCGTACTCATTGCCTCTTCCTTGCACTTCTTGCTCTCCTCCTTCCTCTGGTCACAGCTGCCGGAGATCCATTTGAAGACCAAATTGCAGGTGGTTGGGAACCTATAAAGAATATCGGTGACCCGCATGTGCAAGATATAGCAAAGTGGGCAGTCACCGAGTACAACCAGCAATCCCACAAGGCGTTATTTTTCCTGAGGGTGGTTCAAGGCCAGGAACAAGTCGTAGCTGGAACAAATTATAAGCTTGTCATTAGTGTCAAGGATGGATCCTCTACTATGAATTATGAGGGCTTCGTCTTTGAGAACTTACAAGAGACATCTAGAAAATTGGTCTCCTTTACTAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

118

Amino Acids

13.26

Weight (kDa)

6.27

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	32 - 104	8.9e-14	Cystatin domain
SQAPI	PF16845	37 - 116	8.9e-29	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	83
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	3 cut(s)	65, 267, 280
AfaI	GTAC	2 cut(s)	10, 167
AfiI	CCNNNNNNNGG	2 cut(s)	52, 205
AgsI	TTSAA	2 cut(s)	80, 212
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	3 cut(s)	62, 233, 250
AluI	AGCT	3 cut(s)	62, 233, 250
Alw26I	GTCTC	2 cut(s)	314, 343
AlwI	GGATC	3 cut(s)	65, 267, 280
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	134, 151
AxyI	CCTNAGG	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	314, 343
BfaI	CTAG	2 cut(s)	327, 348
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	105, 274
BmrFI	CCNGG	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 205
Bse21I	CCTNAGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	2 cut(s)	52, 205
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	52, 205
BsmAI	GTCTC	2 cut(s)	314, 343
BsnI	GGCC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	70, 272
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	105, 274
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	3 cut(s)	65, 267, 280
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	13
BssMI	GATC	2 cut(s)	70, 272
Bst2UI	CCWGG	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	200
BstEII	GGTNACC	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	2 cut(s)	73, 275
BstMAI	GTCTC	2 cut(s)	314, 343
BstMBI	GATC	2 cut(s)	70, 272
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 152
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	2 cut(s)	70, 272
BstYI	RGATCY	2 cut(s)	70, 272
Bsu36I	CCTNAGG	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	9, 166
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	5 cut(s)	62, 216, 233, 250, 297
CviKI_1	RGCY	5 cut(s)	62, 216, 233, 250, 297
CviQI	GTAC	2 cut(s)	9, 166
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	2 cut(s)	72, 274
DpnII	GATC	2 cut(s)	70, 272
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco31I	GGTCTC	1 cut(s)	343
Eco81I	CCTNAGG	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	122
EcoO65I	GGTNACC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	134
FaiI	YATR	6 cut(s)	110, 132, 143, 246, 284, 291
FatI	CATG	1 cut(s)	130
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	327, 348
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	66
Hin1II	CATG	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	248
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	2 cut(s)	134, 151
Hpy188III	TCNNGA	2 cut(s)	199, 327
HpyAV	CCTTC	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	29, 92, 136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 152
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	70, 272
LpnPI	CCDG	8 cut(s)	38, 78, 79, 185, 203, 212, 219, 230
Lsp1109I	GCAGC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	327, 348
MaeIII	GTNAC	3 cut(s)	55, 122, 157
MalI	GATC	2 cut(s)	72, 274
MboI	GATC	2 cut(s)	70, 272
MboII	GAAGA	2 cut(s)	13, 92
MflI	RGATCY	2 cut(s)	70, 272
MluCI	AATT	4 cut(s)	87, 241, 286, 332
MnlI	CCTC	6 cut(s)	29, 53, 60, 195, 286, 286
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	35, 152
NdeII	GATC	2 cut(s)	70, 272
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	2 cut(s)	105, 274
NmuCI	GTSAC	3 cut(s)	55, 122, 157
NspI	RCATGY	1 cut(s)	134
PaqCI	CACCTGC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	105, 274
PsuI	RGATCY	2 cut(s)	70, 272
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	10, 167
RsaNI	GTAC	2 cut(s)	9, 166
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	70, 272
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	5 cut(s)	64, 97, 109, 235, 252
Sse9I	AATT	4 cut(s)	87, 241, 286, 332
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	2 cut(s)	327, 348
StyD4I	CCNGG	1 cut(s)	216
TasI	AATT	4 cut(s)	87, 241, 286, 332
TatI	WGTACW	1 cut(s)	165
TseFI	GTSAC	3 cut(s)	55, 122, 157
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	3 cut(s)	55, 122, 157
TspDTI	ATGAA	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	326
XceI	RCATGY	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XspI	CTAG	2 cut(s)	327, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.