FvH4_3g13770

Belongs to the isocitrate and isopropylmalate dehydrogenases family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
8248252 .. 8252551
4300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13770.t1

Sequence Viewer

Length: 1254 bp
ATGGAGGCATTCGATAAGATCAAGGTGACCAACCCAATTGTCGAAATGGATGGAGATGAAATGACTCGAATTTTCTGGAAATCTATAAAAGATAAGCTTATTTTACCCTTTCTGGAATTGGATATCAAGTACTTTGACCTCGGCCTCCCTAATCGTGATGCCACCGATGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTCAAGTACAATGTAGCAATTAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTTAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATAATCTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACAAAGCCAATATGCATTGGGAGGCATGCTTTTGGTGATCAGTACCGAGCAACTGATGCAATCATAAAGGGACCTGGAAAACTTAAGTTAGTTTTTGTACCTGATGGGTCCAATGAGAAACAAGAATATGAGGTTTTCAACTTTACTGGTGCAGGAGGCGTAGCTCTGTCCATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGACGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACGAATTGGAGATCAAGATTTGAAGCTGAAGGAATTTGGTATGAACACCGTCTTATCGATGATATGGTTGCATATGCTCTTAAAAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTATGATGGGGATGTGCAAAGTGACTTAGTAGCACAAGGGTTTGGATCTCTGGGACTGATGACATCAATACTGGTGTGCCCAGATGGAAAGACCATTGAAGCTGAAGCAGCCCATGGTACAGTTACCCGCCATTACCGGGTTCACCAAAAAGGAGGTGAAACCAGCACAAACAGCATAGCTTCTATCTTTGCTTGGTCACGGGGTCTTGCACACAGGGCAAAGTTGGATAGCAATGCCAGACTATTAGATTTTGTGGAGAAACTTGAAGCAGCTTGTGTTGGAACTGTTGAATCTGGGAAGATGACCAAGGATCTTGCACTTCTTATCCATGGGCCTAAGGTCCTTAGGTCTCAGTATCTGAATACTGAAGATTTTATTGATGCCGTGGCTGAGGAGCTGAGATTTAGATTGTTTAGTAGAGCAAAGTTGTGA

Protein Analysis

418

Amino Acids

47.19

Weight (kDa)

7.05

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 8 - 403 1.5e-79 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 306
AciI CCGC 3 cut(s) 364, 587, 949
AclWI GGATC 3 cut(s) 573, 874, 1140
AcoI YGGCCR 1 cut(s) 623
AcsI RAATTY 2 cut(s) 69, 738
AcuI CTGAAG 3 cut(s) 753, 945, 1209
AfaI GTAC 6 cut(s) 131, 209, 325, 425, 480, 940
AfiI CCNNNNNNNGG 1 cut(s) 958
AflII CTTAAG 1 cut(s) 464
AgsI TTSAA 8 cut(s) 185, 274, 520, 679, 728, 920, 1088, 1112
AjnI CCWGG 3 cut(s) 373, 454, 690
AluBI AGCT 8 cut(s) 97, 197, 545, 731, 923, 1001, 1094, 1219
AluI AGCT 8 cut(s) 97, 197, 545, 731, 923, 1001, 1094, 1219
Alw26I GTCTC 1 cut(s) 1176
AlwI GGATC 3 cut(s) 573, 874, 1140
AlwNI CAGNNNCTG 1 cut(s) 1180
Aor13HI TCCGGA 1 cut(s) 306
AoxI GGCC 3 cut(s) 142, 623, 1154
ApeKI GCWGC 2 cut(s) 929, 1091
ApoI RAATTY 2 cut(s) 69, 738
AspS9I GGNCC 4 cut(s) 452, 489, 1154, 1162
AsuC2I CCSGG 1 cut(s) 959
AsuHPI GGTGA 4 cut(s) 37, 428, 956, 989
AvaII GGWCC 3 cut(s) 452, 489, 1162
AxyI CCTNAGG 2 cut(s) 1158, 1166
BaeGI GKGCMC 1 cut(s) 902
BalI TGGCCA 1 cut(s) 625
BauI CACGAG 1 cut(s) 252
BbvCI CCTCAGC 1 cut(s) 1212
BbvI GCAGC 2 cut(s) 941, 1103
BccI CCATC 4 cut(s) 44, 479, 821, 899
BceAI ACGGC 1 cut(s) 1190
BciT130I CCWGG 3 cut(s) 375, 456, 692
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 1 cut(s) 959
BcoDI GTCTC 1 cut(s) 1176
BfmI CTRYAG 1 cut(s) 349
BfrI CTTAAG 1 cut(s) 464
BisI GCNGC 2 cut(s) 930, 1092
BlsI GCNGC 2 cut(s) 931, 1093
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 4 cut(s) 375, 456, 692, 959
Bme18I GGWCC 3 cut(s) 452, 489, 1162
BmgT120I GGNCC 4 cut(s) 452, 489, 1154, 1162
BmiI GGNNCC 2 cut(s) 453, 490
BmrFI CCNGG 4 cut(s) 375, 456, 692, 959
BmsI GCATC 5 cut(s) 148, 427, 580, 602, 1192
Bpu10I CCTNAGC 1 cut(s) 1212
BpuEI CTTGAG 2 cut(s) 188, 641
BpuMI CCSGG 1 cut(s) 959
Bsa29I ATCGAT 1 cut(s) 762
BsaI GGTCTC 1 cut(s) 1176
BsaJI CCNNGG 5 cut(s) 139, 934, 1128, 1150, 1206
BsaWI WCCGGW 1 cut(s) 306
BsaXI ACNNNNNCTCC 4 cut(s) 223, 253, 789, 819
Bsc4I CCNNNNNNNGG 1 cut(s) 958
Bse1I ACTGG 2 cut(s) 532, 897
Bse21I CCTNAGG 2 cut(s) 1158, 1166
Bse3DI GCAATG 1 cut(s) 1060
BseAI TCCGGA 1 cut(s) 306
BseBI CCWGG 3 cut(s) 375, 456, 692
BseCI ATCGAT 1 cut(s) 762
BseDI CCNNGG 5 cut(s) 139, 934, 1128, 1150, 1206
BseGI GGATG 3 cut(s) 55, 595, 838
BseLI CCNNNNNNNGG 1 cut(s) 958
BseMI GCAATG 1 cut(s) 1060
BseMII CTCAG 3 cut(s) 1187, 1203, 1211
BseNI ACTGG 2 cut(s) 532, 897
BseRI GAGGAG 2 cut(s) 301, 1229
BseSI GKGCMC 1 cut(s) 902
BseXI GCAGC 2 cut(s) 941, 1103
BsgI GTGCAG 2 cut(s) 210, 552
BshFI GGCC 3 cut(s) 144, 625, 1156
BshVI ATCGAT 1 cut(s) 762
BsiSI CCGG 2 cut(s) 307, 958
BslFI GGGAC 3 cut(s) 313, 465, 888
BslI CCNNNNNNNGG 1 cut(s) 958
BsmAI GTCTC 1 cut(s) 1176
BsmFI GGGAC 3 cut(s) 313, 465, 888
BsmI GAATGC 1 cut(s) 8
BsnI GGCC 3 cut(s) 144, 625, 1156
Bso31I GGTCTC 1 cut(s) 1176
Bsp1286I GDGCHC 1 cut(s) 902
Bsp13I TCCGGA 1 cut(s) 306
Bsp143I GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
Bsp19I CCATGG 2 cut(s) 934, 1150
BspACI CCGC 3 cut(s) 364, 587, 949
BspANI GGCC 3 cut(s) 144, 625, 1156
BspCNI CTCAG 3 cut(s) 1186, 1204, 1212
BspDI ATCGAT 1 cut(s) 762
BspEI TCCGGA 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 453, 490
BspMAI CTGCAG 1 cut(s) 353
BspPI GGATC 3 cut(s) 573, 874, 1140
BspTI CTTAAG 1 cut(s) 464
BspTNI GGTCTC 1 cut(s) 1176
BsrDI GCAATG 1 cut(s) 1060
BsrI ACTGG 2 cut(s) 532, 897
BssECI CCNNGG 5 cut(s) 139, 934, 1128, 1150, 1206
BssMI GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
BssSI CACGAG 1 cut(s) 252
BssT1I CCWWGG 3 cut(s) 934, 1128, 1150
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 3 cut(s) 375, 456, 692
Bst4CI ACNGT 4 cut(s) 328, 755, 943, 1108
BstAFI CTTAAG 1 cut(s) 464
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 408, 814
BstDEI CTNAG 7 cut(s) 635, 847, 1158, 1166, 1173, 1212, 1220
BstDSI CCRYGG 3 cut(s) 934, 1150, 1206
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 3 cut(s) 55, 595, 838
BstKTI GATC 6 cut(s) 21, 421, 581, 719, 869, 1135
BstMAI GTCTC 1 cut(s) 1176
BstMBI GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
BstMWI GCNNNNNNNGC 4 cut(s) 437, 929, 993, 1037
BstNI CCWGG 3 cut(s) 375, 456, 692
BstNSI RCATGY 2 cut(s) 410, 816
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 4 cut(s) 373, 454, 690, 957
BstSFI CTRYAG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 902
BstV1I GCAGC 2 cut(s) 941, 1103
BstX2I RGATCY 2 cut(s) 866, 1132
BstYI RGATCY 2 cut(s) 866, 1132
Bsu15I ATCGAT 1 cut(s) 762
Bsu36I CCTNAGG 2 cut(s) 1158, 1166
BsuRI GGCC 3 cut(s) 144, 625, 1156
BsuTUI ATCGAT 1 cut(s) 762
BtgI CCRYGG 3 cut(s) 934, 1150, 1206
BtsCI GGATG 3 cut(s) 55, 595, 838
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 2 cut(s) 408, 814
CaiI CAGNNNCTG 1 cut(s) 1180
Cfr13I GGNCC 4 cut(s) 452, 489, 1154, 1162
ClaI ATCGAT 1 cut(s) 762
Csp6I GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
CviAII CATG 5 cut(s) 407, 553, 813, 935, 1151
CviQI GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
DdeI CTNAG 7 cut(s) 635, 847, 1158, 1166, 1173, 1212, 1220
DpnI GATC 6 cut(s) 20, 420, 580, 718, 868, 1134
DpnII GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
DraI TTTAAA 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 623
Eco130I CCWWGG 3 cut(s) 934, 1128, 1150
Eco31I GGTCTC 1 cut(s) 1176
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 3 cut(s) 452, 489, 1162
Eco57I CTGAAG 3 cut(s) 753, 945, 1209
Eco81I CCTNAGG 2 cut(s) 1158, 1166
Eco91I GGTNACC 1 cut(s) 25
EcoO109I RGGNCCY 2 cut(s) 452, 1162
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 3 cut(s) 373, 454, 690
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 3 cut(s) 934, 1128, 1150
EcoT22I ATGCAT 2 cut(s) 398, 595
ErhI CCWWGG 3 cut(s) 934, 1128, 1150
FaeI CATG 5 cut(s) 410, 556, 816, 938, 1154
FalI AAGNNNNNCTT 4 cut(s) 81, 113, 671, 703
FaqI GGGAC 3 cut(s) 313, 465, 888
FatI CATG 5 cut(s) 406, 552, 812, 934, 1150
FauI CCCGC 2 cut(s) 371, 956
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 930, 1092
FokI GGATG 3 cut(s) 62, 602, 845
Fsp4HI GCNGC 2 cut(s) 930, 1092
GluI GCNGC 2 cut(s) 930, 1092
HaeIII GGCC 3 cut(s) 144, 625, 1156
HapII CCGG 2 cut(s) 307, 958
Hin1II CATG 5 cut(s) 410, 556, 816, 938, 1154
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 6 cut(s) 64, 174, 289, 569, 675, 1112
HpaII CCGG 2 cut(s) 307, 958
HphI GGTGA 4 cut(s) 37, 428, 956, 989
Hpy166II GTNNAC 1 cut(s) 964
Hpy188I TCNGA 2 cut(s) 578, 1182
Hpy188III TCNNGA 7 cut(s) 76, 113, 155, 242, 307, 658, 720
Hpy8I GTNNAC 1 cut(s) 964
HpyAV CCTTC 2 cut(s) 728, 788
HpyCH4III ACNGT 4 cut(s) 328, 755, 943, 1108
HpyF10VI GCNNNNNNNGC 4 cut(s) 437, 929, 993, 1037
HpyF3I CTNAG 7 cut(s) 635, 847, 1158, 1166, 1173, 1212, 1220
Hsp92II CATG 5 cut(s) 410, 556, 816, 938, 1154
Kpn2I TCCGGA 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
LmnI GCTCC 1 cut(s) 1216
Lsp1109I GCAGC 2 cut(s) 941, 1103
LweI GCATC 5 cut(s) 148, 427, 580, 602, 1192
MaeIII GTNAC 5 cut(s) 25, 175, 842, 943, 1017
MalI GATC 6 cut(s) 20, 420, 580, 718, 868, 1134
MboI GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
MboII GAAGA 4 cut(s) 679, 684, 1132, 1202
MfeI CAATTG 2 cut(s) 36, 180
MflI RGATCY 2 cut(s) 866, 1132
MhlI GDGCHC 1 cut(s) 902
MlsI TGGCCA 1 cut(s) 625
MluCI AATT 7 cut(s) 36, 69, 116, 180, 219, 709, 738
MluNI TGGCCA 1 cut(s) 625
MlyI GAGTC 4 cut(s) 58, 183, 298, 578
MmeI TCCRAC 3 cut(s) 359, 1026, 1081
MnlI CCTC 9 cut(s) 149, 155, 279, 396, 505, 530, 791, 968, 1207
Mox20I TGGCCA 1 cut(s) 625
Mph1103I ATGCAT 2 cut(s) 398, 595
MroI TCCGGA 1 cut(s) 306
MscI TGGCCA 1 cut(s) 625
MseI TTAA 6 cut(s) 222, 258, 267, 317, 465, 786
Msp20I TGGCCA 1 cut(s) 625
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 2 cut(s) 307, 958
MspR9I CCNGG 4 cut(s) 375, 456, 692, 959
MunI CAATTG 2 cut(s) 36, 180
Mva1269I GAATGC 1 cut(s) 8
MvaI CCWGG 3 cut(s) 375, 456, 692
MwoI GCNNNNNNNGC 4 cut(s) 437, 929, 993, 1037
NciI CCSGG 1 cut(s) 959
NcoI CCATGG 2 cut(s) 934, 1150
NdeI CATATG 1 cut(s) 778
NdeII GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
NlaIII CATG 5 cut(s) 410, 556, 816, 938, 1154
NlaIV GGNNCC 2 cut(s) 453, 490
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 4 cut(s) 25, 175, 842, 1017
NsiI ATGCAT 2 cut(s) 398, 595
NspI RCATGY 2 cut(s) 410, 816
PaeI GCATGC 2 cut(s) 410, 816
PctI GAATGC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 675, 1112
PfoI TCCNGGA 1 cut(s) 690
PkrI GCNGC 2 cut(s) 931, 1093
PleI GAGTC 4 cut(s) 58, 182, 297, 577
PpsI GAGTC 4 cut(s) 58, 182, 297, 577
PpuMI RGGWCCY 2 cut(s) 452, 1162
Psp5II RGGWCCY 2 cut(s) 452, 1162
Psp6I CCWGG 3 cut(s) 373, 454, 690
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 3 cut(s) 373, 454, 690
PspN4I GGNNCC 2 cut(s) 453, 490
PspPI GGNCC 4 cut(s) 452, 489, 1154, 1162
PspPPI RGGWCCY 2 cut(s) 452, 1162
PstI CTGCAG 1 cut(s) 353
PstNI CAGNNNCTG 1 cut(s) 1180
PsuI RGATCY 2 cut(s) 866, 1132
RsaI GTAC 6 cut(s) 131, 209, 325, 425, 480, 940
RsaNI GTAC 6 cut(s) 130, 208, 324, 424, 479, 939
SaqAI TTAA 6 cut(s) 222, 258, 267, 317, 465, 786
SatI GCNGC 2 cut(s) 930, 1092
Sau3AI GATC 6 cut(s) 18, 418, 578, 716, 866, 1132
Sau96I GGNCC 4 cut(s) 452, 489, 1154, 1162
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 4 cut(s) 58, 183, 298, 578
ScrFI CCNGG 4 cut(s) 375, 456, 692, 959
SduI GDGCHC 1 cut(s) 902
SfaNI GCATC 5 cut(s) 148, 427, 580, 602, 1192
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 3 cut(s) 452, 489, 1162
SmlI CTYRAG 3 cut(s) 203, 464, 656
SmoI CTYRAG 3 cut(s) 203, 464, 656
SphI GCATGC 2 cut(s) 410, 816
Sse9I AATT 7 cut(s) 36, 69, 116, 180, 219, 709, 738
SsiI CCGC 3 cut(s) 364, 587, 949
StyD4I CCNGG 4 cut(s) 373, 454, 690, 957
StyI CCWWGG 3 cut(s) 934, 1128, 1150
TaaI ACNGT 4 cut(s) 328, 755, 943, 1108
TaqI TCGA 4 cut(s) 12, 42, 67, 762
TasI AATT 7 cut(s) 36, 69, 116, 180, 219, 709, 738
TatI WGTACW 2 cut(s) 129, 207
TfiI GAWTC 2 cut(s) 675, 1112
Tru1I TTAA 6 cut(s) 222, 258, 267, 317, 465, 786
Tru9I TTAA 6 cut(s) 222, 258, 267, 317, 465, 786
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 4 cut(s) 25, 175, 842, 1017
TseI GCWGC 2 cut(s) 929, 1091
Tsp45I GTSAC 4 cut(s) 25, 175, 842, 1017
TspDTI ATGAA 5 cut(s) 72, 261, 614, 717, 762
TspGWI ACGGA 1 cut(s) 684
TspRI CASTG 1 cut(s) 568
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 3 cut(s) 452, 489, 1162
XapI RAATTY 2 cut(s) 69, 738
XceI RCATGY 2 cut(s) 410, 816
ZrmI AGTACT 1 cut(s) 131
Zsp2I ATGCAT 2 cut(s) 398, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.