Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

16999376 .. 17003937

Gene Structure 4562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG162800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACAAAGCCAATTTGCATTGGGAGGCATGCCTTTGGTGATCAGTACCGAGCAACTGATGCAATCATAAAAGGACCCGGGAAACTTAAATTAGTTTTTGTACCTGATGGGTCCAATGAGAAGCAAGAATTTGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGACGCATCTATGAACACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCTGAAGGGATTTGGTATGAACACCGTCTTATTGACGATATGGTTGCATATGCTCTTAAAAGTGAAGGAGGTTATGTGTGGGCATGCAAAAACTATGATGGGGATGTGCAAAGTGACTTAGTAGCACAAGGTTTTGGATCTCTGGGTCTGATGACATCTATACTGGTGTGCCCAGATGGAAAGACCATTGAAGCTGAAGCAGCCCATGGTACAGTTACCCGCCATTACCGGGTTCACCAAAAAGGAGGTGAAACCAGCACAAACAGCATAGCTTCTATCTTTGCTTGGTCACGAGGTCTTGCACACAGGGCAAAGTTGGATAGCAATGCCAGGCTCTTGGACTTTGTGGAGAAACTTGAAGCAGCTTGTGTTGGAACTGTTGAATCTGGGAAGATGACCAAGGATCTTGCTCTCCTTATCCATGGGCCTAAGGTCCTTAGGTCTCAGTATCTCAATACTGAAGAATTTATTGACGCCGTGGCTGAGGAGCTGAGAGTTAGATTGTTTAGTAGAGCAAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

324

Amino Acids

36.42

Weight (kDa)

8.66

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	1 - 310	1.7e-59	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	3 cut(s)	85, 308, 670
AclWI	GGATC	4 cut(s)	294, 432, 595, 861
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	227, 914
AcuI	CTGAAG	3 cut(s)	474, 666, 930
AcyI	GRCGYC	1 cut(s)	924
AfaI	GTAC	4 cut(s)	46, 146, 201, 661
AfiI	CCNNNNNNNGG	1 cut(s)	679
AgsI	TTSAA	6 cut(s)	241, 400, 449, 641, 809, 833
AjnI	CCWGG	3 cut(s)	94, 411, 779
AluBI	AGCT	6 cut(s)	266, 452, 644, 722, 815, 940
AluI	AGCT	6 cut(s)	266, 452, 644, 722, 815, 940
Alw26I	GTCTC	1 cut(s)	897
AlwI	GGATC	4 cut(s)	294, 432, 595, 861
Ama87I	CYCGRG	1 cut(s)	176
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	2 cut(s)	344, 875
ApeKI	GCWGC	2 cut(s)	650, 812
ApoI	RAATTY	2 cut(s)	227, 914
AspS9I	GGNCC	4 cut(s)	173, 210, 875, 883
AsuC2I	CCSGG	3 cut(s)	177, 178, 680
AsuHPI	GGTGA	3 cut(s)	149, 677, 710
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	3 cut(s)	173, 210, 883
AxyI	CCTNAGG	2 cut(s)	879, 887
BaeGI	GKGCMC	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	346
BauI	CACGAG	1 cut(s)	741
BbvCI	CCTCAGC	1 cut(s)	933
BbvI	GCAGC	2 cut(s)	662, 824
BccI	CCATC	4 cut(s)	200, 383, 542, 620
BceAI	ACGGC	1 cut(s)	911
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	3 cut(s)	96, 413, 781
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	3 cut(s)	177, 178, 680
BcoDI	GTCTC	1 cut(s)	897
BfmI	CTRYAG	1 cut(s)	70
BisI	GCNGC	2 cut(s)	651, 813
BlsI	GCNGC	2 cut(s)	652, 814
Bme1390I	CCNGG	6 cut(s)	96, 177, 178, 413, 680, 781
Bme18I	GGWCC	3 cut(s)	173, 210, 883
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	4 cut(s)	173, 210, 875, 883
BmiI	GGNNCC	2 cut(s)	175, 211
BmrFI	CCNGG	6 cut(s)	96, 177, 178, 413, 680, 781
BmsI	GCATC	2 cut(s)	148, 323
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	3 cut(s)	177, 178, 680
BsaHI	GRCGYC	1 cut(s)	924
BsaI	GGTCTC	1 cut(s)	897
BsaJI	CCNNGG	5 cut(s)	176, 655, 849, 871, 927
BsaWI	WCCGGW	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse1I	ACTGG	2 cut(s)	253, 618
Bse21I	CCTNAGG	2 cut(s)	879, 887
Bse3DI	GCAATG	1 cut(s)	781
BseAI	TCCGGA	1 cut(s)	27
BseBI	CCWGG	3 cut(s)	96, 413, 781
BseDI	CCNNGG	5 cut(s)	176, 655, 849, 871, 927
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	3 cut(s)	908, 924, 932
BseNI	ACTGG	2 cut(s)	253, 618
BseRI	GAGGAG	2 cut(s)	22, 950
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	2 cut(s)	662, 824
BshFI	GGCC	2 cut(s)	346, 877
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	28, 177, 679
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	1 cut(s)	897
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	346, 877
Bso31I	GGTCTC	1 cut(s)	897
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	623
Bsp13I	TCCGGA	1 cut(s)	27
Bsp143I	GATC	5 cut(s)	139, 299, 437, 587, 853
Bsp19I	CCATGG	2 cut(s)	655, 871
BspACI	CCGC	3 cut(s)	85, 308, 670
BspANI	GGCC	2 cut(s)	346, 877
BspCNI	CTCAG	3 cut(s)	907, 925, 933
BspEI	TCCGGA	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	175, 211
BspMAI	CTGCAG	1 cut(s)	74
BspPI	GGATC	4 cut(s)	294, 432, 595, 861
BspTNI	GGTCTC	1 cut(s)	897
BsrDI	GCAATG	1 cut(s)	781
BsrI	ACTGG	2 cut(s)	253, 618
BssECI	CCNNGG	5 cut(s)	176, 655, 849, 871, 927
BssMI	GATC	5 cut(s)	139, 299, 437, 587, 853
BssNI	GRCGYC	1 cut(s)	924
BssSI	CACGAG	1 cut(s)	741
BssT1I	CCWWGG	3 cut(s)	655, 849, 871
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	3 cut(s)	96, 413, 781
Bst4CI	ACNGT	4 cut(s)	49, 476, 664, 829
BstACI	GRCGYC	1 cut(s)	924
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	129, 535
BstDEI	CTNAG	7 cut(s)	356, 568, 879, 887, 894, 933, 941
BstDSI	CCRYGG	3 cut(s)	655, 871, 927
BstF5I	GGATG	1 cut(s)	559
BstKTI	GATC	5 cut(s)	142, 302, 440, 590, 856
BstMAI	GTCTC	1 cut(s)	897
BstMBI	GATC	5 cut(s)	139, 299, 437, 587, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 650, 714, 758
BstNI	CCWGG	3 cut(s)	96, 413, 781
BstNSI	RCATGY	2 cut(s)	131, 537
BstSCI	CCNGG	6 cut(s)	94, 175, 176, 411, 678, 779
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	623
BstV1I	GCAGC	2 cut(s)	662, 824
BstX2I	RGATCY	3 cut(s)	437, 587, 853
BstXI	CCANNNNNNTGG	1 cut(s)	787
BstYI	RGATCY	3 cut(s)	437, 587, 853
Bsu36I	CCTNAGG	2 cut(s)	879, 887
BsuRI	GGCC	2 cut(s)	346, 877
BtgI	CCRYGG	3 cut(s)	655, 871, 927
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	282, 324
Cac8I	GCNNGC	2 cut(s)	129, 535
Cfr13I	GGNCC	4 cut(s)	173, 210, 875, 883
Cfr9I	CCCGGG	1 cut(s)	176
CseI	GACGC	2 cut(s)	320, 932
Csp6I	GTAC	4 cut(s)	45, 145, 200, 660
CviAII	CATG	4 cut(s)	128, 534, 656, 872
CviQI	GTAC	4 cut(s)	45, 145, 200, 660
DdeI	CTNAG	7 cut(s)	356, 568, 879, 887, 894, 933, 941
DpnI	GATC	5 cut(s)	141, 301, 439, 589, 855
DpnII	GATC	5 cut(s)	139, 299, 437, 587, 853
DraI	TTTAAA	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	344
Eco130I	CCWWGG	3 cut(s)	655, 849, 871
Eco31I	GGTCTC	1 cut(s)	897
Eco47I	GGWCC	3 cut(s)	173, 210, 883
Eco57I	CTGAAG	3 cut(s)	474, 666, 930
Eco81I	CCTNAGG	2 cut(s)	879, 887
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	2 cut(s)	173, 883
EcoRII	CCWGG	3 cut(s)	94, 411, 779
EcoT14I	CCWWGG	3 cut(s)	655, 849, 871
ErhI	CCWWGG	3 cut(s)	655, 849, 871
FaeI	CATG	4 cut(s)	131, 537, 659, 875
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	4 cut(s)	127, 533, 655, 871
FauI	CCCGC	2 cut(s)	92, 677
FauNDI	CATATG	1 cut(s)	499
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	651, 813
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	651, 813
GluI	GCNGC	2 cut(s)	651, 813
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	346, 877
HapII	CCGG	3 cut(s)	28, 177, 679
HgaI	GACGC	2 cut(s)	320, 932
Hin1I	GRCGYC	1 cut(s)	924
Hin1II	CATG	4 cut(s)	131, 537, 659, 875
HinfI	GANTC	4 cut(s)	10, 290, 396, 833
HpaII	CCGG	3 cut(s)	28, 177, 679
HphI	GGTGA	3 cut(s)	149, 677, 710
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	2 cut(s)	299, 600
Hpy188III	TCNNGA	4 cut(s)	28, 379, 441, 741
Hpy8I	GTNNAC	1 cut(s)	685
HpyAV	CCTTC	2 cut(s)	449, 509
HpyCH4III	ACNGT	4 cut(s)	49, 476, 664, 829
HpyCH4V	TGCA	7 cut(s)	72, 117, 161, 497, 537, 559, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 650, 714, 758
HpyF3I	CTNAG	7 cut(s)	356, 568, 879, 887, 894, 933, 941
Hsp92I	GRCGYC	1 cut(s)	924
Hsp92II	CATG	4 cut(s)	131, 537, 659, 875
Kpn2I	TCCGGA	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	5 cut(s)	139, 299, 437, 587, 853
LmnI	GCTCC	1 cut(s)	937
Lsp1109I	GCAGC	2 cut(s)	662, 824
LweI	GCATC	2 cut(s)	148, 323
MaeIII	GTNAC	3 cut(s)	563, 664, 738
MalI	GATC	5 cut(s)	141, 301, 439, 589, 855
MboI	GATC	5 cut(s)	139, 299, 437, 587, 853
MboII	GAAGA	4 cut(s)	400, 405, 853, 923
MflI	RGATCY	3 cut(s)	437, 587, 853
MhlI	GDGCHC	1 cut(s)	623
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	4 cut(s)	111, 188, 227, 914
MluNI	TGGCCA	1 cut(s)	346
MlyI	GAGTC	2 cut(s)	19, 299
MmeI	TCCRAC	3 cut(s)	80, 747, 802
MnlI	CCTC	7 cut(s)	117, 226, 251, 512, 689, 737, 928
Mox20I	TGGCCA	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	3 cut(s)	38, 186, 507
Msp20I	TGGCCA	1 cut(s)	346
MspI	CCGG	3 cut(s)	28, 177, 679
MspR9I	CCNGG	6 cut(s)	96, 177, 178, 413, 680, 781
MvaI	CCWGG	3 cut(s)	96, 413, 781
MwoI	GCNNNNNNNGC	4 cut(s)	158, 650, 714, 758
NciI	CCSGG	3 cut(s)	177, 178, 680
NcoI	CCATGG	2 cut(s)	655, 871
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	5 cut(s)	139, 299, 437, 587, 853
NlaIII	CATG	4 cut(s)	131, 537, 659, 875
NlaIV	GGNNCC	2 cut(s)	175, 211
NmuCI	GTSAC	2 cut(s)	563, 738
NspI	RCATGY	2 cut(s)	131, 537
PaeI	GCATGC	2 cut(s)	131, 537
PfeI	GAWTC	2 cut(s)	396, 833
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	2 cut(s)	652, 814
PleI	GAGTC	2 cut(s)	18, 298
PpsI	GAGTC	2 cut(s)	18, 298
PpuMI	RGGWCCY	2 cut(s)	173, 883
Psp5II	RGGWCCY	2 cut(s)	173, 883
Psp6I	CCWGG	3 cut(s)	94, 411, 779
PspGI	CCWGG	3 cut(s)	94, 411, 779
PspN4I	GGNNCC	2 cut(s)	175, 211
PspPI	GGNCC	4 cut(s)	173, 210, 875, 883
PspPPI	RGGWCCY	2 cut(s)	173, 883
PsrI	GAACNNNNNNTAC	2 cut(s)	314, 346
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	3 cut(s)	437, 587, 853
RsaI	GTAC	4 cut(s)	46, 146, 201, 661
RsaNI	GTAC	4 cut(s)	45, 145, 200, 660
SaqAI	TTAA	3 cut(s)	38, 186, 507
SatI	GCNGC	2 cut(s)	651, 813
Sau3AI	GATC	5 cut(s)	139, 299, 437, 587, 853
Sau96I	GGNCC	4 cut(s)	173, 210, 875, 883
SchI	GAGTC	2 cut(s)	19, 299
ScrFI	CCNGG	6 cut(s)	96, 177, 178, 413, 680, 781
SduI	GDGCHC	1 cut(s)	623
SfaNI	GCATC	2 cut(s)	148, 323
SfcI	CTRYAG	1 cut(s)	70
SinI	GGWCC	3 cut(s)	173, 210, 883
SmaI	CCCGGG	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	2 cut(s)	131, 537
Sse9I	AATT	4 cut(s)	111, 188, 227, 914
SsiI	CCGC	3 cut(s)	85, 308, 670
StyD4I	CCNGG	6 cut(s)	94, 175, 176, 411, 678, 779
StyI	CCWWGG	3 cut(s)	655, 849, 871
TaaI	ACNGT	4 cut(s)	49, 476, 664, 829
TasI	AATT	4 cut(s)	111, 188, 227, 914
TfiI	GAWTC	2 cut(s)	396, 833
Tru1I	TTAA	3 cut(s)	38, 186, 507
Tru9I	TTAA	3 cut(s)	38, 186, 507
TscAI	CASTG	2 cut(s)	289, 331
TseFI	GTSAC	2 cut(s)	563, 738
TseI	GCWGC	2 cut(s)	650, 812
Tsp45I	GTSAC	2 cut(s)	563, 738
TspDTI	ATGAA	3 cut(s)	335, 438, 483
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	2 cut(s)	289, 331
VpaK11BI	GGWCC	3 cut(s)	173, 210, 883
XapI	RAATTY	2 cut(s)	227, 914
XceI	RCATGY	2 cut(s)	131, 537
XmaI	CCCGGG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.