Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

78151655 .. 78156019

Gene Structure 4365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAGGCATTCAATAAGATCAAGGTGACCAACCCAATTGTCGAAATGGATGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGTACCTGATGGGCCCAATGAGAAGCAAGAATTTGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACAAAAAATACGATTCTCAAGAAATATGATGGAAGGTATGAACACCGTCTTATCGACGATATGGTTGCATATGCTCTTAAAAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTATGATGGAGATGTGCAAAGTGACTTGGTGTGCCCAGATGGAAAGACCATTGAAGCTGAAGCAGCCCATGGTACAGTTACCCGCCATTACCGGGTTCACCAAAAAGGAGGTGAAACCAGCACAAACAGCATAGCTTCTATCTTTGCTTGGTCACGAGGTCTTGCACACAGATATGAGCTTGATCCAATCTGTGTCATCAGGGCAAAGTTGGATAGCAATGCCAGGCTTTTAGACTTTGTGGAGAAACTTGAAGCAGCTTGTGTTGGAACTGTTGAATCTGGGAAGATGACCAAGGATCTTGCGCTCCTTATACATGGGCCTAAGGTCCTTAGGTCTCAGTATCTCAATACTGAAGAATTTATTGATGCTGTGGCTGAGGAGCTGAGAGTTAGATTGTTTAGTAAAGCAAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

273

Amino Acids

30.83

Weight (kDa)

6.34

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	60 - 259	4.5e-23	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	2 cut(s)	239, 487
AclWI	GGATC	3 cut(s)	225, 581, 708
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	2 cut(s)	158, 761
AcuI	CTGAAG	2 cut(s)	483, 777
AfaI	GTAC	2 cut(s)	132, 478
AfiI	CCNNNNNNNGG	1 cut(s)	496
AgsI	TTSAA	7 cut(s)	13, 76, 82, 172, 458, 656, 680
AjnI	CCWGG	1 cut(s)	626
AluBI	AGCT	6 cut(s)	197, 461, 539, 583, 662, 787
AluI	AGCT	6 cut(s)	197, 461, 539, 583, 662, 787
Alw26I	GTCTC	1 cut(s)	744
AlwI	GGATC	3 cut(s)	225, 581, 708
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	3 cut(s)	140, 275, 722
ApaI	GGGCCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	467, 659
ApoI	RAATTY	2 cut(s)	158, 761
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	4 cut(s)	140, 141, 722, 730
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	3 cut(s)	37, 494, 527
AvaII	GGWCC	1 cut(s)	730
AxyI	CCTNAGG	2 cut(s)	726, 734
BaeGI	GKGCMC	2 cut(s)	144, 440
BalI	TGGCCA	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	2 cut(s)	60, 558
BbvCI	CCTCAGC	1 cut(s)	780
BbvI	GCAGC	2 cut(s)	479, 671
BccI	CCATC	4 cut(s)	131, 314, 404, 437
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	744
BisI	GCNGC	2 cut(s)	468, 660
BlsI	GCNGC	2 cut(s)	469, 661
Bme1390I	CCNGG	2 cut(s)	497, 628
Bme18I	GGWCC	1 cut(s)	730
BmgT120I	GGNCC	4 cut(s)	140, 141, 722, 730
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	497, 628
BmsI	GCATC	3 cut(s)	232, 254, 760
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	472, 696
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	1 cut(s)	184
Bse21I	CCTNAGG	2 cut(s)	726, 734
Bse3DI	GCAATG	1 cut(s)	628
BseAI	TCCGGA	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	628
BseDI	CCNNGG	2 cut(s)	472, 696
BseGI	GGATG	2 cut(s)	55, 247
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	3 cut(s)	755, 771, 779
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	2 cut(s)	109, 797
BseSI	GKGCMC	2 cut(s)	144, 440
BseXI	GCAGC	2 cut(s)	479, 671
BshFI	GGCC	3 cut(s)	142, 277, 724
BsiSI	CCGG	2 cut(s)	115, 496
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmAI	GTCTC	1 cut(s)	744
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	3 cut(s)	142, 277, 724
Bso31I	GGTCTC	1 cut(s)	744
Bsp120I	GGGCCC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	144, 440
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	18, 230, 586, 700
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	2 cut(s)	239, 487
BspANI	GGCC	3 cut(s)	142, 277, 724
BspCNI	CTCAG	3 cut(s)	754, 772, 780
BspEI	TCCGGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	3 cut(s)	225, 581, 708
BspTNI	GGTCTC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	472, 696
BssMI	GATC	4 cut(s)	18, 230, 586, 700
BssSI	CACGAG	2 cut(s)	60, 558
BssT1I	CCWWGG	2 cut(s)	472, 696
Bst2BI	CACGAG	2 cut(s)	60, 558
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	3 cut(s)	338, 481, 676
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	6 cut(s)	287, 726, 734, 741, 780, 788
BstDSI	CCRYGG	1 cut(s)	472
BstEII	GGTNACC	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	55, 247
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	4 cut(s)	21, 233, 589, 703
BstMAI	GTCTC	1 cut(s)	744
BstMBI	GATC	4 cut(s)	18, 230, 586, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 531
BstNI	CCWGG	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	399
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	495, 626
BstSLI	GKGCMC	2 cut(s)	144, 440
BstV1I	GCAGC	2 cut(s)	479, 671
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
Bsu36I	CCTNAGG	2 cut(s)	726, 734
BsuRI	GGCC	3 cut(s)	142, 277, 724
BtgI	CCRYGG	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	55, 247
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	397
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	4 cut(s)	140, 141, 722, 730
Csp6I	GTAC	2 cut(s)	131, 477
CviAII	CATG	3 cut(s)	396, 473, 719
CviQI	GTAC	2 cut(s)	131, 477
DdeI	CTNAG	6 cut(s)	287, 726, 734, 741, 780, 788
DpnI	GATC	4 cut(s)	20, 232, 588, 702
DpnII	GATC	4 cut(s)	18, 230, 586, 700
DraI	TTTAAA	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	472, 696
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	744
Eco47I	GGWCC	1 cut(s)	730
Eco57I	CTGAAG	2 cut(s)	483, 777
Eco81I	CCTNAGG	2 cut(s)	726, 734
Eco91I	GGTNACC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	730
EcoO65I	GGTNACC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	626
EcoT14I	CCWWGG	2 cut(s)	472, 696
EcoT22I	ATGCAT	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	472, 696
FaeI	CATG	3 cut(s)	399, 476, 722
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	3 cut(s)	395, 472, 718
FauI	CCCGC	1 cut(s)	494
FauNDI	CATATG	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	468, 660
FokI	GGATG	2 cut(s)	62, 254
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	468, 660
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	2 cut(s)	468, 660
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	142, 277, 724
HapII	CCGG	2 cut(s)	115, 496
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	3 cut(s)	399, 476, 722
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HinfI	GANTC	4 cut(s)	97, 221, 304, 680
HpaII	CCGG	2 cut(s)	115, 496
HphI	GGTGA	3 cut(s)	37, 494, 527
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	3 cut(s)	115, 310, 558
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	318, 371
HpyCH4III	ACNGT	3 cut(s)	338, 481, 676
HpyCH4V	TGCA	5 cut(s)	245, 359, 399, 421, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 531
HpyF3I	CTNAG	6 cut(s)	287, 726, 734, 741, 780, 788
Hsp92II	CATG	3 cut(s)	399, 476, 722
HspAI	GCGC	1 cut(s)	707
Kpn2I	TCCGGA	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	18, 230, 586, 700
LmnI	GCTCC	2 cut(s)	714, 784
Lsp1109I	GCAGC	2 cut(s)	479, 671
LweI	GCATC	3 cut(s)	232, 254, 760
MaeIII	GTNAC	4 cut(s)	25, 425, 481, 555
MalI	GATC	4 cut(s)	20, 232, 588, 702
MboI	GATC	4 cut(s)	18, 230, 586, 700
MboII	GAAGA	2 cut(s)	700, 770
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	2 cut(s)	144, 440
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	3 cut(s)	36, 158, 761
MluNI	TGGCCA	1 cut(s)	277
MlyI	GAGTC	2 cut(s)	106, 230
MmeI	TCCRAC	2 cut(s)	594, 649
MnlI	CCTC	7 cut(s)	87, 157, 182, 374, 506, 554, 775
Mox20I	TGGCCA	1 cut(s)	277
Mph1103I	ATGCAT	1 cut(s)	247
MroI	TCCGGA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	277
MseI	TTAA	3 cut(s)	66, 125, 369
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	277
MspI	CCGG	2 cut(s)	115, 496
MspR9I	CCNGG	2 cut(s)	497, 628
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	628
MwoI	GCNNNNNNNGC	2 cut(s)	467, 531
NciI	CCSGG	1 cut(s)	497
NcoI	CCATGG	1 cut(s)	472
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	4 cut(s)	18, 230, 586, 700
NlaIII	CATG	3 cut(s)	399, 476, 722
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	3 cut(s)	25, 425, 555
NsiI	ATGCAT	1 cut(s)	247
NspI	RCATGY	1 cut(s)	399
PaeI	GCATGC	1 cut(s)	399
PctI	GAATGC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	304, 680
PkrI	GCNGC	2 cut(s)	469, 661
PleI	GAGTC	2 cut(s)	105, 229
PpsI	GAGTC	2 cut(s)	105, 229
PpuMI	RGGWCCY	1 cut(s)	730
Psp5II	RGGWCCY	1 cut(s)	730
Psp6I	CCWGG	1 cut(s)	626
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	1 cut(s)	142
PspOMI	GGGCCC	1 cut(s)	140
PspPI	GGNCC	4 cut(s)	140, 141, 722, 730
PspPPI	RGGWCCY	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	2 cut(s)	132, 478
RsaNI	GTAC	2 cut(s)	131, 477
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	66, 125, 369
SatI	GCNGC	2 cut(s)	468, 660
Sau3AI	GATC	4 cut(s)	18, 230, 586, 700
Sau96I	GGNCC	4 cut(s)	140, 141, 722, 730
SchI	GAGTC	2 cut(s)	106, 230
ScrFI	CCNGG	2 cut(s)	497, 628
SduI	GDGCHC	2 cut(s)	144, 440
SfaNI	GCATC	3 cut(s)	232, 254, 760
SinI	GGWCC	1 cut(s)	730
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	399
Sse9I	AATT	3 cut(s)	36, 158, 761
SsiI	CCGC	2 cut(s)	239, 487
StyD4I	CCNGG	2 cut(s)	495, 626
StyI	CCWWGG	2 cut(s)	472, 696
TaaI	ACNGT	3 cut(s)	338, 481, 676
TaqI	TCGA	2 cut(s)	42, 345
TasI	AATT	3 cut(s)	36, 158, 761
TfiI	GAWTC	2 cut(s)	304, 680
Tru1I	TTAA	3 cut(s)	66, 125, 369
Tru9I	TTAA	3 cut(s)	66, 125, 369
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	3 cut(s)	25, 425, 555
TseI	GCWGC	2 cut(s)	467, 659
Tsp45I	GTSAC	3 cut(s)	25, 425, 555
TspDTI	ATGAA	3 cut(s)	69, 266, 345
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	730
XapI	RAATTY	2 cut(s)	158, 761
XceI	RCATGY	1 cut(s)	399
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.