Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

33374664 .. 33378263

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG284700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCCTCTACAGCTCTGGTGATTTCATCATTTCATGTTCTTAATGAATCTGCAACTTGTTTCCATGTTTCACAACTTATTTTGCCCTTTCTGGAACTGGATATCGAGTACTTTGATCTTGGCCTCCCTAATGGTGATGCCACCAATGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCACTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCCTCATCGAAATATCGGAGATCCAGATTTGAAGCCTCATCGAAATATCCCTCCCCGACGGATATTCTGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGGTGATGCTGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAACCTATGCAAGTAGAATTTGTCACTCGTGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGATGATCGTTACCAGATTGGAATCTACACTGTACGTAAGATTCAATATGGTGAAGAGATCACATTGGACTACAACTCTATTAAGGAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

311

Amino Acids

35.41

Weight (kDa)

8.02

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	29 - 195	7.8e-21	Isocitrate/isopropylmalate dehydrogenase
SET	PF00856	201 - 306	2.4e-12	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	285
AciI	CCGC	2 cut(s)	343, 464
AclWI	GGATC	3 cut(s)	450, 588, 621
AcoI	YGGCCR	2 cut(s)	500, 678
AcsI	RAATTY	1 cut(s)	795
AfaI	GTAC	4 cut(s)	110, 188, 304, 876
AfiI	CCNNNNNNNGG	1 cut(s)	687
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	8 cut(s)	164, 247, 253, 397, 556, 605, 638, 887
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	3 cut(s)	14, 176, 422
AluI	AGCT	3 cut(s)	14, 176, 422
AlwI	GGATC	3 cut(s)	450, 588, 621
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	4 cut(s)	3, 121, 500, 678
ApoI	RAATTY	1 cut(s)	795
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	4 cut(s)	31, 146, 743, 905
AvaII	GGWCC	1 cut(s)	366
BalI	TGGCCA	2 cut(s)	502, 680
BauI	CACGAG	2 cut(s)	231, 805
BccI	CCATC	4 cut(s)	356, 539, 709, 734
BciT130I	CCWGG	1 cut(s)	569
BfmI	CTRYAG	3 cut(s)	9, 328, 840
BfrI	CTTAAG	1 cut(s)	182
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	5 cut(s)	127, 457, 479, 724, 754
BpmI	CTGGAG	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	518
BsaAI	YACGTR	1 cut(s)	878
BsaBI	GATNNNNATC	1 cut(s)	863
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	687
Bse1I	ACTGG	2 cut(s)	102, 409
Bse8I	GATNNNNATC	1 cut(s)	863
BseAI	TCCGGA	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	569
BseGI	GGATG	1 cut(s)	472
BseJI	GATNNNNATC	1 cut(s)	863
BseLI	CCNNNNNNNGG	1 cut(s)	687
BseNI	ACTGG	2 cut(s)	102, 409
BseRI	GAGGAG	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	4 cut(s)	5, 123, 502, 680
BsiSI	CCGG	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	687
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	4 cut(s)	5, 123, 502, 680
Bsp13I	TCCGGA	1 cut(s)	285
Bsp143I	GATC	6 cut(s)	115, 455, 593, 626, 847, 900
BspACI	CCGC	2 cut(s)	343, 464
BspANI	GGCC	4 cut(s)	5, 123, 502, 680
BspEI	TCCGGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	332
BspPI	GGATC	3 cut(s)	450, 588, 621
BspTI	CTTAAG	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	102, 409
BssMI	GATC	6 cut(s)	115, 455, 593, 626, 847, 900
BssSI	CACGAG	2 cut(s)	231, 805
Bst2BI	CACGAG	2 cut(s)	231, 805
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	2 cut(s)	307, 874
Bst6I	CTCTTC	2 cut(s)	689, 891
BstAFI	CTTAAG	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBAI	YACGTR	1 cut(s)	878
BstDEI	CTNAG	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	6 cut(s)	118, 458, 596, 629, 850, 903
BstMBI	GATC	6 cut(s)	115, 455, 593, 626, 847, 900
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 785
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	3 cut(s)	9, 328, 840
BstSNI	TACGTA	1 cut(s)	878
BstX2I	RGATCY	2 cut(s)	593, 626
BstYI	RGATCY	2 cut(s)	593, 626
BsuRI	GGCC	4 cut(s)	5, 123, 502, 680
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	438, 870
Cfr13I	GGNCC	1 cut(s)	366
Csp6I	GTAC	4 cut(s)	109, 187, 303, 875
CviAII	CATG	4 cut(s)	35, 65, 682, 769
CviJI	RGCY	9 cut(s)	5, 14, 123, 176, 422, 502, 608, 641, 680
CviKI_1	RGCY	9 cut(s)	5, 14, 123, 176, 422, 502, 608, 641, 680
CviQI	GTAC	4 cut(s)	109, 187, 303, 875
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	6 cut(s)	117, 457, 595, 628, 849, 902
DpnII	GATC	6 cut(s)	115, 455, 593, 626, 847, 900
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	500, 678
Eam1104I	CTCTTC	2 cut(s)	689, 891
EarI	CTCTTC	2 cut(s)	689, 891
Eco105I	TACGTA	1 cut(s)	878
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	567
EcoRV	GATATC	1 cut(s)	103
EcoT22I	ATGCAT	2 cut(s)	472, 774
FaeI	CATG	4 cut(s)	38, 68, 685, 772
FalI	AAGNNNNNCTT	4 cut(s)	165, 197, 548, 580
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	34, 64, 681, 768
FauI	CCCGC	1 cut(s)	350
FokI	GGATG	1 cut(s)	479
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	4 cut(s)	5, 123, 502, 680
HapII	CCGG	1 cut(s)	286
Hin1II	CATG	4 cut(s)	38, 68, 685, 772
HinfI	GANTC	8 cut(s)	47, 153, 268, 446, 552, 697, 864, 883
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	4 cut(s)	31, 146, 743, 905
Hpy188I	TCNGA	3 cut(s)	455, 624, 935
Hpy188III	TCNNGA	6 cut(s)	92, 221, 286, 535, 597, 630
Hpy99I	CGWCG	1 cut(s)	667
HpyCH4III	ACNGT	2 cut(s)	307, 874
HpyCH4IV	ACGT	1 cut(s)	877
HpyCH4V	TGCA	8 cut(s)	53, 170, 209, 330, 470, 714, 772, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 785
HpyF3I	CTNAG	1 cut(s)	512
HpySE526I	ACGT	1 cut(s)	877
Hsp92II	CATG	4 cut(s)	38, 68, 685, 772
Kpn2I	TCCGGA	1 cut(s)	285
Kzo9I	GATC	6 cut(s)	115, 455, 593, 626, 847, 900
LweI	GCATC	5 cut(s)	127, 457, 479, 724, 754
MaeII	ACGT	1 cut(s)	877
MaeIII	GTNAC	4 cut(s)	154, 800, 832, 851
MalI	GATC	6 cut(s)	117, 457, 595, 628, 849, 902
MboI	GATC	6 cut(s)	115, 455, 593, 626, 847, 900
MboII	GAAGA	5 cut(s)	556, 561, 703, 706, 908
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	2 cut(s)	593, 626
MlsI	TGGCCA	2 cut(s)	502, 680
MluCI	AATT	3 cut(s)	159, 795, 817
MluNI	TGGCCA	2 cut(s)	502, 680
MlyI	GAGTC	4 cut(s)	162, 277, 455, 706
MnlI	CCTC	9 cut(s)	16, 134, 258, 382, 407, 619, 652, 667, 922
Mox20I	TGGCCA	2 cut(s)	502, 680
Mph1103I	ATGCAT	2 cut(s)	472, 774
MroI	TCCGGA	1 cut(s)	285
MscI	TGGCCA	2 cut(s)	502, 680
MseI	TTAA	5 cut(s)	42, 183, 237, 296, 924
Msp20I	TGGCCA	2 cut(s)	502, 680
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	569
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	2 cut(s)	11, 785
NdeII	GATC	6 cut(s)	115, 455, 593, 626, 847, 900
NlaIII	CATG	4 cut(s)	38, 68, 685, 772
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	2 cut(s)	154, 800
NsiI	ATGCAT	2 cut(s)	472, 774
PfeI	GAWTC	4 cut(s)	47, 552, 864, 883
PfoI	TCCNGGA	1 cut(s)	567
PleI	GAGTC	4 cut(s)	161, 276, 454, 705
PpsI	GAGTC	4 cut(s)	161, 276, 454, 705
Ppu21I	YACGTR	1 cut(s)	878
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	593, 626
RsaI	GTAC	4 cut(s)	110, 188, 304, 876
RsaNI	GTAC	4 cut(s)	109, 187, 303, 875
SaqAI	TTAA	5 cut(s)	42, 183, 237, 296, 924
Sau3AI	GATC	6 cut(s)	115, 455, 593, 626, 847, 900
Sau96I	GGNCC	1 cut(s)	366
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	4 cut(s)	162, 277, 455, 706
ScrFI	CCNGG	1 cut(s)	569
SfaNI	GCATC	5 cut(s)	127, 457, 479, 724, 754
SfcI	CTRYAG	3 cut(s)	9, 328, 840
SinI	GGWCC	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	182, 533
SmoI	CTYRAG	2 cut(s)	182, 533
SnaBI	TACGTA	1 cut(s)	878
Sse9I	AATT	3 cut(s)	159, 795, 817
SsiI	CCGC	2 cut(s)	343, 464
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	307, 874
TaiI	ACGT	1 cut(s)	880
TaqI	TCGA	3 cut(s)	105, 614, 647
TasI	AATT	3 cut(s)	159, 795, 817
TatI	WGTACW	2 cut(s)	108, 186
TfiI	GAWTC	4 cut(s)	47, 552, 864, 883
Tru1I	TTAA	5 cut(s)	42, 183, 237, 296, 924
Tru9I	TTAA	5 cut(s)	42, 183, 237, 296, 924
TscAI	CASTG	2 cut(s)	445, 877
TseFI	GTSAC	2 cut(s)	154, 800
Tsp45I	GTSAC	2 cut(s)	154, 800
TspDTI	ATGAA	6 cut(s)	15, 23, 60, 240, 491, 594
TspGWI	ACGGA	1 cut(s)	680
TspRI	CASTG	2 cut(s)	445, 877
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	1 cut(s)	795
ZrmI	AGTACT	1 cut(s)	110
Zsp2I	ATGCAT	2 cut(s)	472, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.