Rh4AG076600

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
15559174 .. 15563407
4234 bp
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UTR
Exon/CDS
Intron
Rh4AG076600.1

Sequence Viewer

Length: 270 bp
ATGTCTATTACAGGCATAAATGAGTTGCAAGAAGGTTTTGTTGAAGCGAAAATGGCACTAACCAGTTGCAAAAATGGCACTAACCAGTTCCACCTTTTTAAGCAGGGGTTTCTGAATCCAAATGAAGTTCACATTTTCGGCTATGCAAGGACTAAGATTTCTTATGATGAGCTAAGAAGCCGCATACGTGGATATCTCAACCAAGGAGCTTCGTCCAAGGACTTGGATGATGTAACCAAATTTTTGCAACTGTTTCGTGATCGCAGGTGA

Protein Analysis

89

Amino Acids

10.28

Weight (kDa)

9.25

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AciI CCGC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 239
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 2 cut(s) 172, 209
AluI AGCT 2 cut(s) 172, 209
ApoI RAATTY 1 cut(s) 239
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BsaAI YACGTR 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 202, 216
Bse1I ACTGG 2 cut(s) 63, 85
BseDI CCNNGG 2 cut(s) 202, 216
BseGI GGATG 1 cut(s) 232
BseNI ACTGG 2 cut(s) 63, 85
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 255
BsrI ACTGG 2 cut(s) 63, 85
BssECI CCNNGG 2 cut(s) 202, 216
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 202, 216
Bst4CI ACNGT 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 153, 173
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 53, 75
BstXI CCANNNNNNTGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 255
CviJI RGCY 4 cut(s) 141, 172, 180, 209
CviKI_1 RGCY 4 cut(s) 141, 172, 180, 209
DdeI CTNAG 2 cut(s) 153, 173
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 202, 216
Eco32I GATATC 1 cut(s) 194
EcoRV GATATC 1 cut(s) 194
EcoT14I CCWWGG 2 cut(s) 202, 216
ErhI CCWWGG 2 cut(s) 202, 216
FaiI YATR 4 cut(s) 17, 144, 165, 185
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 181
HinfI GANTC 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 4 cut(s) 28, 69, 146, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 75
HpyF3I CTNAG 2 cut(s) 153, 173
HpySE526I ACGT 1 cut(s) 187
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 4 cut(s) 76, 89, 98, 250
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MluCI AATT 1 cut(s) 239
MseI TTAA 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 53, 75
NdeII GATC 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 182
Ppu21I YACGTR 1 cut(s) 188
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 1 cut(s) 259
SetI ASST 6 cut(s) 37, 96, 174, 190, 211, 269
Sse9I AATT 1 cut(s) 239
SsiI CCGC 1 cut(s) 181
StyI CCWWGG 2 cut(s) 202, 216
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 1 cut(s) 190
TasI AATT 1 cut(s) 239
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 138
XapI RAATTY 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.