Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

33226836 .. 33255774

Gene Structure 28939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG286700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGAACAGTGACGAGGAAGATATGAGCGTAGGGTTAACGAATGGTATGGTATTCTTGTATATTTACATTTTGTATATGTGGATAGTTGTGGGAACTCCGAGTTATATGTGCCCTAAGCTTCTTGCCGATATACCATATGGTTCTAAGTTAGATATTTGGTCTCTAGAGTCGACCTCTCCCCCCAAACAGTCGCCCAAGACCTTCTACCTCATAACCCTAACCGCCAATCCTAGCCCATTCTCTCTGAAGCTGATTGAATTCCAGGTATTGATTAGAAATGGCGGTGAAGCACGGGCTCCACCGAAACAGAGCCGCCAAATCTCATTCCCTACTGCGGAGATGAAAAGACTCGAATTTTCTGGAAATCTATCAAAGATAAGGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTATTGTTTTTAGAGAACCTATTATCTGCATAAATGTTCCCCGCCTTGTTCCAGTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCCTCATCGAAATATCCCTCCCCGACGGATATTATGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGGTGATGCTAATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAACCTATGCAAGTAGAATTTGTCACTCGTGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGATGATCGTTACCAGATTGGAATCTACACTGTACGTAAGATTCAATACGGTGAAGAGATCACATTGGACTACAACTCTATTAAGGAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

366

Amino Acids

41.66

Weight (kDa)

8.91

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	129 - 261	3.4e-12	Isocitrate/isopropylmalate dehydrogenase
SET	PF00856	273 - 361	4.4e-12	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	483
AciI	CCGC	6 cut(s)	225, 285, 316, 338, 541, 662
AclWI	GGATC	2 cut(s)	648, 786
AcoI	YGGCCR	2 cut(s)	698, 843
AcsI	RAATTY	3 cut(s)	260, 356, 960
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	3 cut(s)	386, 555, 1041
AfiI	CCNNNNNNNGG	2 cut(s)	337, 852
AgsI	TTSAA	7 cut(s)	260, 445, 451, 595, 754, 803, 1052
AjnI	CCWGG	2 cut(s)	264, 765
AluBI	AGCT	3 cut(s)	121, 253, 620
AluI	AGCT	3 cut(s)	121, 253, 620
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	648, 786
AlwNI	CAGNNNCTG	1 cut(s)	557
Aor13HI	TCCGGA	1 cut(s)	483
AoxI	GGCC	2 cut(s)	698, 843
ApoI	RAATTY	3 cut(s)	260, 356, 960
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	3 cut(s)	299, 908, 1070
AvaII	GGWCC	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	116
BalI	TGGCCA	2 cut(s)	700, 845
BanII	GRGCYC	1 cut(s)	301
BauI	CACGAG	2 cut(s)	429, 970
BccI	CCATC	3 cut(s)	554, 737, 874
BciT130I	CCWGG	2 cut(s)	266, 767
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	167, 234
BfmI	CTRYAG	1 cut(s)	1005
BisI	GCNGC	1 cut(s)	316
BlsI	GCNGC	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	266, 767
Bme18I	GGWCC	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	2 cut(s)	300, 565
BmrFI	CCNGG	2 cut(s)	266, 767
BmsI	GCATC	4 cut(s)	655, 677, 889, 919
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BpmI	CTGGAG	1 cut(s)	630
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	716
BsaAI	YACGTR	1 cut(s)	1043
BsaBI	GATNNNNATC	1 cut(s)	1028
BsaI	GGTCTC	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	483
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 852
Bse1I	ACTGG	2 cut(s)	551, 607
Bse8I	GATNNNNATC	1 cut(s)	1028
BseAI	TCCGGA	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	266, 767
BseGI	GGATG	1 cut(s)	670
BseJI	GATNNNNATC	1 cut(s)	1028
BseLI	CCNNNNNNNGG	2 cut(s)	337, 852
BseNI	ACTGG	2 cut(s)	551, 607
BseRI	GAGGAG	1 cut(s)	478
BseSI	GKGCMC	1 cut(s)	116
BshFI	GGCC	2 cut(s)	700, 845
BsiSI	CCGG	1 cut(s)	484
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	2 cut(s)	337, 852
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	2 cut(s)	700, 845
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	116, 301
Bsp13I	TCCGGA	1 cut(s)	483
Bsp143I	GATC	4 cut(s)	653, 791, 1012, 1065
BspACI	CCGC	6 cut(s)	225, 285, 316, 338, 541, 662
BspANI	GGCC	2 cut(s)	700, 845
BspEI	TCCGGA	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	300, 565
BspPI	GGATC	2 cut(s)	648, 786
BspTNI	GGTCTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	551, 607
BssMI	GATC	4 cut(s)	653, 791, 1012, 1065
BssSI	CACGAG	2 cut(s)	429, 970
Bst2BI	CACGAG	2 cut(s)	429, 970
Bst2UI	CCWGG	2 cut(s)	266, 767
Bst4CI	ACNGT	4 cut(s)	11, 192, 1039, 1058
Bst6I	CTCTTC	2 cut(s)	854, 1056
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstBAI	YACGTR	1 cut(s)	1043
BstDEI	CTNAG	3 cut(s)	117, 147, 710
BstF5I	GGATG	1 cut(s)	670
BstKTI	GATC	4 cut(s)	656, 794, 1015, 1068
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	4 cut(s)	653, 791, 1012, 1065
BstMWI	GCNNNNNNNGC	1 cut(s)	950
BstNI	CCWGG	2 cut(s)	266, 767
BstSCI	CCNGG	2 cut(s)	264, 765
BstSFI	CTRYAG	1 cut(s)	1005
BstSLI	GKGCMC	1 cut(s)	116
BstSNI	TACGTA	1 cut(s)	1043
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
BsuRI	GGCC	2 cut(s)	700, 845
BtsCI	GGATG	1 cut(s)	670
BtsIMutI	CAGTG	3 cut(s)	16, 636, 1035
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr13I	GGNCC	1 cut(s)	564
Csp6I	GTAC	3 cut(s)	385, 554, 1040
CviAII	CATG	2 cut(s)	847, 934
CviJI	RGCY	9 cut(s)	121, 237, 253, 299, 315, 620, 700, 806, 845
CviKI_1	RGCY	9 cut(s)	121, 237, 253, 299, 315, 620, 700, 806, 845
CviQI	GTAC	3 cut(s)	385, 554, 1040
DdeI	CTNAG	3 cut(s)	117, 147, 710
DpnI	GATC	4 cut(s)	655, 793, 1014, 1067
DpnII	GATC	4 cut(s)	653, 791, 1012, 1065
DraI	TTTAAA	1 cut(s)	495
EaeI	YGGCCR	2 cut(s)	698, 843
Eam1104I	CTCTTC	2 cut(s)	854, 1056
EarI	CTCTTC	2 cut(s)	854, 1056
Eco105I	TACGTA	1 cut(s)	1043
Eco24I	GRGCYC	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	264, 765
EcoT22I	ATGCAT	2 cut(s)	670, 939
EcoT38I	GRGCYC	1 cut(s)	301
FaeI	CATG	2 cut(s)	850, 937
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	2 cut(s)	846, 933
FauI	CCCGC	1 cut(s)	548
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	316
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	316
FspBI	CTAG	2 cut(s)	167, 234
GluI	GCNGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	700, 845
HapII	CCGG	1 cut(s)	484
Hin1II	CATG	2 cut(s)	850, 937
HincII	GTYRAC	2 cut(s)	39, 174
HindII	GTYRAC	2 cut(s)	39, 174
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	8 cut(s)	170, 351, 466, 644, 750, 862, 1029, 1048
HpaI	GTTAAC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	3 cut(s)	299, 908, 1070
Hpy166II	GTNNAC	2 cut(s)	39, 174
Hpy188I	TCNGA	4 cut(s)	102, 249, 653, 1100
Hpy188III	TCNNGA	6 cut(s)	167, 363, 419, 484, 733, 795
Hpy8I	GTNNAC	2 cut(s)	39, 174
Hpy99I	CGWCG	1 cut(s)	832
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	4 cut(s)	11, 192, 1039, 1058
HpyCH4IV	ACGT	1 cut(s)	1042
HpyCH4V	TGCA	6 cut(s)	407, 528, 668, 879, 937, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	950
HpyF3I	CTNAG	3 cut(s)	117, 147, 710
HpySE526I	ACGT	1 cut(s)	1042
Hsp92II	CATG	2 cut(s)	850, 937
Kpn2I	TCCGGA	1 cut(s)	483
KspAI	GTTAAC	1 cut(s)	39
Kzo9I	GATC	4 cut(s)	653, 791, 1012, 1065
LmnI	GCTCC	1 cut(s)	304
LweI	GCATC	4 cut(s)	655, 677, 889, 919
MaeI	CTAG	2 cut(s)	167, 234
MaeII	ACGT	1 cut(s)	1042
MaeIII	GTNAC	4 cut(s)	11, 965, 997, 1016
MalI	GATC	4 cut(s)	655, 793, 1014, 1067
MboI	GATC	4 cut(s)	653, 791, 1012, 1065
MboII	GAAGA	6 cut(s)	32, 754, 759, 868, 871, 1073
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	2 cut(s)	116, 301
MlsI	TGGCCA	2 cut(s)	700, 845
MluCI	AATT	4 cut(s)	260, 356, 960, 982
MluNI	TGGCCA	2 cut(s)	700, 845
MlyI	GAGTC	5 cut(s)	179, 345, 475, 653, 871
MnlI	CCTC	9 cut(s)	10, 187, 221, 456, 580, 605, 817, 832, 1087
Mox20I	TGGCCA	2 cut(s)	700, 845
Mph1103I	ATGCAT	2 cut(s)	670, 939
MroI	TCCGGA	1 cut(s)	483
MscI	TGGCCA	2 cut(s)	700, 845
MseI	TTAA	4 cut(s)	38, 435, 494, 1089
Msp20I	TGGCCA	2 cut(s)	700, 845
MspI	CCGG	1 cut(s)	484
MspR9I	CCNGG	2 cut(s)	266, 767
MvaI	CCWGG	2 cut(s)	266, 767
MwoI	GCNNNNNNNGC	1 cut(s)	950
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	4 cut(s)	653, 791, 1012, 1065
NlaIII	CATG	2 cut(s)	850, 937
NlaIV	GGNNCC	2 cut(s)	300, 565
NmuCI	GTSAC	2 cut(s)	11, 965
NsiI	ATGCAT	2 cut(s)	670, 939
PfeI	GAWTC	3 cut(s)	750, 1029, 1048
PfoI	TCCNGGA	1 cut(s)	765
PkrI	GCNGC	1 cut(s)	317
PleI	GAGTC	5 cut(s)	178, 345, 474, 652, 870
PpsI	GAGTC	5 cut(s)	178, 345, 474, 652, 870
Ppu21I	YACGTR	1 cut(s)	1043
Psp6I	CCWGG	2 cut(s)	264, 765
PspGI	CCWGG	2 cut(s)	264, 765
PspN4I	GGNNCC	2 cut(s)	300, 565
PspPI	GGNCC	1 cut(s)	564
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	791
RsaI	GTAC	3 cut(s)	386, 555, 1041
RsaNI	GTAC	3 cut(s)	385, 554, 1040
SalI	GTCGAC	1 cut(s)	172
SaqAI	TTAA	4 cut(s)	38, 435, 494, 1089
SatI	GCNGC	1 cut(s)	316
Sau3AI	GATC	4 cut(s)	653, 791, 1012, 1065
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	5 cut(s)	179, 345, 475, 653, 871
ScrFI	CCNGG	2 cut(s)	266, 767
SduI	GDGCHC	2 cut(s)	116, 301
SfaNI	GCATC	4 cut(s)	655, 677, 889, 919
SfcI	CTRYAG	1 cut(s)	1005
SinI	GGWCC	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SnaBI	TACGTA	1 cut(s)	1043
Sse9I	AATT	4 cut(s)	260, 356, 960, 982
SsiI	CCGC	6 cut(s)	225, 285, 316, 338, 541, 662
SspMI	CTAG	2 cut(s)	167, 234
StyD4I	CCNGG	2 cut(s)	264, 765
TaaI	ACNGT	4 cut(s)	11, 192, 1039, 1058
TaiI	ACGT	1 cut(s)	1045
TaqI	TCGA	3 cut(s)	173, 354, 812
TasI	AATT	4 cut(s)	260, 356, 960, 982
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	750, 1029, 1048
Tru1I	TTAA	4 cut(s)	38, 435, 494, 1089
Tru9I	TTAA	4 cut(s)	38, 435, 494, 1089
TscAI	CASTG	3 cut(s)	16, 643, 1042
TseFI	GTSAC	2 cut(s)	11, 965
Tsp45I	GTSAC	2 cut(s)	11, 965
TspDTI	ATGAA	4 cut(s)	359, 438, 689, 792
TspGWI	ACGGA	1 cut(s)	845
TspRI	CASTG	3 cut(s)	16, 643, 1042
VpaK11BI	GGWCC	1 cut(s)	564
XapI	RAATTY	3 cut(s)	260, 356, 960
XbaI	TCTAGA	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	173
XspI	CTAG	2 cut(s)	167, 234
Zsp2I	ATGCAT	2 cut(s)	670, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.