Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000303.1

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

112099 .. 115886

Gene Structure 3788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000303.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggacaatcattggctaacgtactattctgatgatctgaatcattttatttggatttcaatagatgaaactcgtgttaaggagttcaacttgaaacagatgtggaggagtccaaatgggacaatccggaacattttaaatggtactgttgttagagaacctattatctgcagaaatgttccccgccttgttccaggttggacgaggccaatatgcattgggaggcttgctttcgtacctgatgggtccaatgagaagcaagaatatgaggttttcaactttactggtgctggagggtctatccgatcctttgtggatgcatctaagaatactgcctaccagaaaaagtggccactttatcttagcactaaaaatactattctcaagaaatatgatggaagagttactgctgtagatgatcgttaccagattggaatctacactgtacgtaagattcaatacagtgaagagatcacattggactacaactctattaaggagagtaaggaagaatatgaagcatcagattgtttgtgtggcagtcaagtttgccggggaggttacctgaatttgataggcgaaggatcattcttggagggtcaaacatatgctgcatatgctccacaagatggcaattggattgctcgttcgattcctattggctttgctccagtccttcaagctgaggctgttagattgaagaccggattactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

238

Amino Acids

27.12

Weight (kDa)

7.57

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	2 cut(s)	300, 592
AcoI	YGGCCR	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	568
AfaI	GTAC	4 cut(s)	23, 145, 237, 447
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	7 cut(s)	60, 88, 94, 277, 458, 680, 700
AjnI	CCWGG	1 cut(s)	193
AloI	GAACNNNNNNTCC	2 cut(s)	631, 663
AluBI	AGCT	1 cut(s)	683
AluI	AGCT	1 cut(s)	683
AlwI	GGATC	2 cut(s)	300, 592
Aor13HI	TCCGGA	1 cut(s)	126
AoxI	GGCC	2 cut(s)	206, 350
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	246
BaeI	ACNNNNGTAYC	2 cut(s)	135, 168
BalI	TGGCCA	1 cut(s)	352
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	707
BbvCI	CCTCAGC	1 cut(s)	684
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	3 cut(s)	236, 389, 623
BciT130I	CCWGG	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	554
BfaI	CTAG	1 cut(s)	715
BfmI	CTRYAG	2 cut(s)	169, 411
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
Bme1390I	CCNGG	2 cut(s)	195, 554
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	195, 554
BmsI	GCATC	3 cut(s)	307, 329, 530
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	2 cut(s)	312, 654
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	554
BsaAI	YACGTR	1 cut(s)	449
BsaBI	GATNNNNATC	2 cut(s)	39, 434
BsaJI	CCNNGG	1 cut(s)	553
BsaWI	WCCGGW	2 cut(s)	126, 704
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	289, 671
Bse8I	GATNNNNATC	2 cut(s)	39, 434
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	2 cut(s)	39, 434
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	2 cut(s)	289, 671
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	598
BshFI	GGCC	2 cut(s)	208, 352
BsiSI	CCGG	3 cut(s)	127, 553, 705
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	208, 352
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	5 cut(s)	34, 305, 418, 471, 584
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	2 cut(s)	208, 352
BspCNI	CTCAG	1 cut(s)	676
BspEI	TCCGGA	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	173
BspPI	GGATC	2 cut(s)	300, 592
BsrI	ACTGG	2 cut(s)	289, 671
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	5 cut(s)	34, 305, 418, 471, 584
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	3 cut(s)	148, 445, 464
Bst6I	CTCTTC	2 cut(s)	394, 462
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	324, 362, 684
BstEII	GGTNACC	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	5 cut(s)	37, 308, 421, 474, 587
BstMBI	GATC	5 cut(s)	34, 305, 418, 471, 584
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	193, 552
BstSFI	CTRYAG	2 cut(s)	169, 411
BstSNI	TACGTA	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	1 cut(s)	707
BsuRI	GGCC	2 cut(s)	208, 352
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	441, 469
Cac8I	GCNNGC	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	4 cut(s)	22, 144, 236, 446
CviJI	RGCY	7 cut(s)	16, 208, 226, 352, 663, 683, 689
CviKI_1	RGCY	7 cut(s)	16, 208, 226, 352, 663, 683, 689
CviQI	GTAC	4 cut(s)	22, 144, 236, 446
DdeI	CTNAG	3 cut(s)	324, 362, 684
DpnI	GATC	5 cut(s)	36, 307, 420, 473, 586
DpnII	GATC	5 cut(s)	34, 305, 418, 471, 584
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	350
Eam1104I	CTCTTC	2 cut(s)	394, 462
EarI	CTCTTC	2 cut(s)	394, 462
Eco105I	TACGTA	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	246
Eco91I	GGTNACC	1 cut(s)	560
EcoO65I	GGTNACC	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	193
EcoT22I	ATGCAT	2 cut(s)	218, 322
FaiI	YATR	8 cut(s)	214, 267, 393, 516, 607, 609, 616, 618
FaqI	GGGAC	1 cut(s)	133
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	2 cut(s)	607, 616
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	1 cut(s)	715
GluI	GCNGC	1 cut(s)	612
GsuI	CTGGAG	2 cut(s)	312, 654
HaeIII	GGCC	2 cut(s)	208, 352
HapII	CCGG	3 cut(s)	127, 553, 705
HinfI	GANTC	5 cut(s)	40, 109, 435, 454, 652
HpaII	CCGG	3 cut(s)	127, 553, 705
Hpy188I	TCNGA	4 cut(s)	31, 39, 305, 526
Hpy188III	TCNNGA	2 cut(s)	127, 385
HpyAV	CCTTC	2 cut(s)	575, 686
HpyCH4III	ACNGT	3 cut(s)	148, 445, 464
HpyCH4IV	ACGT	2 cut(s)	20, 448
HpyCH4V	TGCA	4 cut(s)	171, 216, 320, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	3 cut(s)	324, 362, 684
HpySE526I	ACGT	2 cut(s)	20, 448
Kpn2I	TCCGGA	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	34, 305, 418, 471, 584
LmnI	GCTCC	2 cut(s)	625, 673
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	3 cut(s)	307, 329, 530
MaeI	CTAG	1 cut(s)	715
MaeII	ACGT	2 cut(s)	20, 448
MaeIII	GTNAC	3 cut(s)	403, 422, 560
MalI	GATC	5 cut(s)	36, 307, 420, 473, 586
MboI	GATC	5 cut(s)	34, 305, 418, 471, 584
MboII	GAAGA	4 cut(s)	411, 479, 521, 712
MfeI	CAATTG	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	352
MluCI	AATT	2 cut(s)	568, 634
MluNI	TGGCCA	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	8 cut(s)	99, 198, 216, 262, 287, 551, 589, 679
Mox20I	TGGCCA	1 cut(s)	352
Mph1103I	ATGCAT	2 cut(s)	218, 322
MroI	TCCGGA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	352
MseI	TTAA	3 cut(s)	78, 137, 495
Msp20I	TGGCCA	1 cut(s)	352
MspI	CCGG	3 cut(s)	127, 553, 705
MspR9I	CCNGG	2 cut(s)	195, 554
MunI	CAATTG	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	617
NciI	CCSGG	1 cut(s)	554
NdeI	CATATG	2 cut(s)	607, 616
NdeII	GATC	5 cut(s)	34, 305, 418, 471, 584
NlaIV	GGNNCC	1 cut(s)	247
NsiI	ATGCAT	2 cut(s)	218, 322
PfeI	GAWTC	4 cut(s)	40, 435, 454, 652
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
Ppu21I	YACGTR	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	193
PspEI	GGTNACC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	246
PstI	CTGCAG	1 cut(s)	173
RsaI	GTAC	4 cut(s)	23, 145, 237, 447
RsaNI	GTAC	4 cut(s)	22, 144, 236, 446
SaqAI	TTAA	3 cut(s)	78, 137, 495
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	5 cut(s)	34, 305, 418, 471, 584
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	2 cut(s)	195, 554
SetI	ASST	9 cut(s)	23, 163, 199, 241, 273, 451, 562, 567, 685
SfaNI	GCATC	3 cut(s)	307, 329, 530
SfcI	CTRYAG	2 cut(s)	169, 411
SinI	GGWCC	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SnaBI	TACGTA	1 cut(s)	449
Sse9I	AATT	2 cut(s)	568, 634
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	1 cut(s)	715
StyD4I	CCNGG	2 cut(s)	193, 552
TaaI	ACNGT	3 cut(s)	148, 445, 464
TaiI	ACGT	2 cut(s)	23, 451
TaqI	TCGA	1 cut(s)	650
TasI	AATT	2 cut(s)	568, 634
TfiI	GAWTC	4 cut(s)	40, 435, 454, 652
Tru1I	TTAA	3 cut(s)	78, 137, 495
Tru9I	TTAA	3 cut(s)	78, 137, 495
TscAI	CASTG	2 cut(s)	448, 469
TseI	GCWGC	1 cut(s)	611
TspDTI	ATGAA	2 cut(s)	81, 531
TspRI	CASTG	2 cut(s)	448, 469
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	568
XspI	CTAG	1 cut(s)	715
Zsp2I	ATGCAT	2 cut(s)	218, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.