Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

17406394 .. 17410786

Gene Structure 4393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG162200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGATGCATTGTTTCCATGATGCAGGAGATGAAATGACTCGAATTTTCTGGAAATCTATCAAAGATAAGCTTATTTTGCCCTTTCTGGAACTGGATATCAAGTACTTTGATCTTGGCCTCCCTAATCGTGATGCCACCAGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACAAGGGCAATATGCATTGGGAGGCATGCTTTCGGTGATCAGTACCGAGCAACTGATGCAATCATAAAAGGACCTGGGAAACTTAAATTAGTTTTTGTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCTGAAGGGATTTGGTATGAACACCGTCTTATTGACGATATGGTTGCATATGCTCTTAAAAGTGAAGGAGGTTATGTATGGGCATGCAAAAATTATGATGGGGATGTGCAAAGTGACTTGGTAGCACAAGGTTTTGGATCTCTGGGTCTGATGACATCTATACTGGTGTGCCCAGATGGAAAGACCATTGAAGCTGAAGCAGCCCATGGTACAGTTACCCGCCATTACCGGGTTCACCAAAAAGGAGGTGAAACCAGCACAAACAGCATAGCTTCTATCTTTGCTTGGTCACGAGGTCTTGCACACAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

338

Amino Acids

38.42

Weight (kDa)

8.11

Isoelectric Point (pI)

27.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	8 - 337	2.8e-67	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	279
AciI	CCGC	3 cut(s)	337, 560, 922
AclWI	GGATC	3 cut(s)	546, 684, 847
AcoI	YGGCCR	1 cut(s)	596
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	2 cut(s)	726, 918
AfaI	GTAC	6 cut(s)	104, 182, 298, 398, 453, 913
AfiI	CCNNNNNNNGG	1 cut(s)	931
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	7 cut(s)	158, 241, 247, 493, 652, 701, 893
AjnI	CCWGG	3 cut(s)	346, 427, 663
AluBI	AGCT	6 cut(s)	70, 170, 518, 704, 896, 974
AluI	AGCT	6 cut(s)	70, 170, 518, 704, 896, 974
AlwI	GGATC	3 cut(s)	546, 684, 847
Aor13HI	TCCGGA	1 cut(s)	279
AoxI	GGCC	2 cut(s)	115, 596
ApeKI	GCWGC	1 cut(s)	902
ApoI	RAATTY	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	425, 462
AsuC2I	CCSGG	1 cut(s)	932
AsuHPI	GGTGA	3 cut(s)	401, 929, 962
AvaII	GGWCC	2 cut(s)	425, 462
BaeGI	GKGCMC	1 cut(s)	875
BalI	TGGCCA	1 cut(s)	598
BauI	CACGAG	2 cut(s)	225, 993
BbvI	GCAGC	1 cut(s)	914
BccI	CCATC	4 cut(s)	452, 635, 794, 872
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	3 cut(s)	348, 429, 665
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	932
BfmI	CTRYAG	1 cut(s)	322
BfrI	CTTAAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	903
BlsI	GCNGC	1 cut(s)	904
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	4 cut(s)	348, 429, 665, 932
Bme18I	GGWCC	2 cut(s)	425, 462
BmgT120I	GGNCC	2 cut(s)	425, 462
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	4 cut(s)	348, 429, 665, 932
BmsI	GCATC	5 cut(s)	10, 121, 400, 553, 575
BpmI	CTGGAG	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	932
BsaJI	CCNNGG	2 cut(s)	428, 907
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	4 cut(s)	196, 226, 762, 792
Bsc4I	CCNNNNNNNGG	1 cut(s)	931
Bse1I	ACTGG	4 cut(s)	96, 138, 505, 870
BseAI	TCCGGA	1 cut(s)	279
BseBI	CCWGG	3 cut(s)	348, 429, 665
BseDI	CCNNGG	2 cut(s)	428, 907
BseGI	GGATG	2 cut(s)	568, 811
BseLI	CCNNNNNNNGG	1 cut(s)	931
BseNI	ACTGG	4 cut(s)	96, 138, 505, 870
BseRI	GAGGAG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	875
BseXI	GCAGC	1 cut(s)	914
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	117, 598
BsiSI	CCGG	2 cut(s)	280, 931
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	931
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	117, 598
Bsp1286I	GDGCHC	1 cut(s)	875
Bsp13I	TCCGGA	1 cut(s)	279
Bsp143I	GATC	5 cut(s)	109, 391, 551, 689, 839
Bsp19I	CCATGG	1 cut(s)	907
BspACI	CCGC	3 cut(s)	337, 560, 922
BspANI	GGCC	2 cut(s)	117, 598
BspEI	TCCGGA	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	463
BspMAI	CTGCAG	1 cut(s)	326
BspPI	GGATC	3 cut(s)	546, 684, 847
BspTI	CTTAAG	1 cut(s)	176
BsrI	ACTGG	4 cut(s)	96, 138, 505, 870
BssECI	CCNNGG	2 cut(s)	428, 907
BssMI	GATC	5 cut(s)	109, 391, 551, 689, 839
BssSI	CACGAG	2 cut(s)	225, 993
BssT1I	CCWWGG	1 cut(s)	907
Bst2BI	CACGAG	2 cut(s)	225, 993
Bst2UI	CCWGG	3 cut(s)	348, 429, 665
Bst4CI	ACNGT	3 cut(s)	301, 728, 916
BstAFI	CTTAAG	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	381, 787
BstDEI	CTNAG	1 cut(s)	608
BstDSI	CCRYGG	1 cut(s)	907
BstF5I	GGATG	2 cut(s)	568, 811
BstKTI	GATC	5 cut(s)	112, 394, 554, 692, 842
BstMBI	GATC	5 cut(s)	109, 391, 551, 689, 839
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 410, 902, 966
BstNI	CCWGG	3 cut(s)	348, 429, 665
BstNSI	RCATGY	2 cut(s)	383, 789
BstSCI	CCNGG	4 cut(s)	346, 427, 663, 930
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	875
BstV1I	GCAGC	1 cut(s)	914
BstX2I	RGATCY	2 cut(s)	689, 839
BstYI	RGATCY	2 cut(s)	689, 839
BsuRI	GGCC	2 cut(s)	117, 598
BtgI	CCRYGG	1 cut(s)	907
BtsCI	GGATG	2 cut(s)	568, 811
BtsIMutI	CAGTG	2 cut(s)	145, 534
Cac8I	GCNNGC	2 cut(s)	381, 787
Cfr13I	GGNCC	2 cut(s)	425, 462
Csp6I	GTAC	6 cut(s)	103, 181, 297, 397, 452, 912
CviAII	CATG	4 cut(s)	17, 380, 786, 908
CviJI	RGCY	9 cut(s)	70, 117, 170, 518, 598, 704, 896, 905, 974
CviKI_1	RGCY	9 cut(s)	70, 117, 170, 518, 598, 704, 896, 905, 974
CviQI	GTAC	6 cut(s)	103, 181, 297, 397, 452, 912
DdeI	CTNAG	1 cut(s)	608
DpnI	GATC	5 cut(s)	111, 393, 553, 691, 841
DpnII	GATC	5 cut(s)	109, 391, 551, 689, 839
DraI	TTTAAA	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	907
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	425, 462
Eco57I	CTGAAG	2 cut(s)	726, 918
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	3 cut(s)	346, 427, 663
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	907
EcoT22I	ATGCAT	3 cut(s)	9, 371, 568
ErhI	CCWWGG	1 cut(s)	907
FaeI	CATG	4 cut(s)	20, 383, 789, 911
FalI	AAGNNNNNCTT	6 cut(s)	54, 86, 159, 191, 644, 676
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	4 cut(s)	16, 379, 785, 907
FauI	CCCGC	2 cut(s)	344, 929
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	903
FokI	GGATG	2 cut(s)	575, 818
Fsp4HI	GCNGC	1 cut(s)	903
GluI	GCNGC	1 cut(s)	903
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	117, 598
HapII	CCGG	2 cut(s)	280, 931
Hin1II	CATG	4 cut(s)	20, 383, 789, 911
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	5 cut(s)	37, 147, 262, 542, 648
HpaII	CCGG	2 cut(s)	280, 931
HphI	GGTGA	3 cut(s)	401, 929, 962
Hpy166II	GTNNAC	1 cut(s)	937
Hpy188I	TCNGA	2 cut(s)	551, 852
Hpy188III	TCNNGA	8 cut(s)	49, 86, 128, 215, 280, 631, 693, 993
Hpy8I	GTNNAC	1 cut(s)	937
HpyAV	CCTTC	2 cut(s)	701, 761
HpyCH4III	ACNGT	3 cut(s)	301, 728, 916
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 410, 902, 966
HpyF3I	CTNAG	1 cut(s)	608
Hsp92II	CATG	4 cut(s)	20, 383, 789, 911
Kpn2I	TCCGGA	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	5 cut(s)	109, 391, 551, 689, 839
Lsp1109I	GCAGC	1 cut(s)	914
LweI	GCATC	5 cut(s)	10, 121, 400, 553, 575
MaeIII	GTNAC	4 cut(s)	148, 815, 916, 990
MalI	GATC	5 cut(s)	111, 393, 553, 691, 841
MboI	GATC	5 cut(s)	109, 391, 551, 689, 839
MboII	GAAGA	2 cut(s)	652, 657
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	2 cut(s)	689, 839
MhlI	GDGCHC	1 cut(s)	875
MlsI	TGGCCA	1 cut(s)	598
MluCI	AATT	4 cut(s)	42, 153, 440, 793
MluNI	TGGCCA	1 cut(s)	598
MlyI	GAGTC	4 cut(s)	31, 156, 271, 551
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	8 cut(s)	128, 252, 369, 478, 503, 764, 941, 989
Mox20I	TGGCCA	1 cut(s)	598
Mph1103I	ATGCAT	3 cut(s)	9, 371, 568
MroI	TCCGGA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	598
MseI	TTAA	5 cut(s)	177, 231, 290, 438, 759
Msp20I	TGGCCA	1 cut(s)	598
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	2 cut(s)	280, 931
MspR9I	CCNGG	4 cut(s)	348, 429, 665, 932
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	3 cut(s)	348, 429, 665
MwoI	GCNNNNNNNGC	4 cut(s)	76, 410, 902, 966
NciI	CCSGG	1 cut(s)	932
NcoI	CCATGG	1 cut(s)	907
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	5 cut(s)	109, 391, 551, 689, 839
NlaIII	CATG	4 cut(s)	20, 383, 789, 911
NlaIV	GGNNCC	1 cut(s)	463
NmuCI	GTSAC	3 cut(s)	148, 815, 990
NsiI	ATGCAT	3 cut(s)	9, 371, 568
NspI	RCATGY	2 cut(s)	383, 789
PaeI	GCATGC	2 cut(s)	383, 789
PfeI	GAWTC	1 cut(s)	648
PfoI	TCCNGGA	1 cut(s)	663
PkrI	GCNGC	1 cut(s)	904
PleI	GAGTC	4 cut(s)	31, 155, 270, 550
PpsI	GAGTC	4 cut(s)	31, 155, 270, 550
PpuMI	RGGWCCY	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	3 cut(s)	346, 427, 663
PspGI	CCWGG	3 cut(s)	346, 427, 663
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	2 cut(s)	425, 462
PspPPI	RGGWCCY	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	689, 839
RsaI	GTAC	6 cut(s)	104, 182, 298, 398, 453, 913
RsaNI	GTAC	6 cut(s)	103, 181, 297, 397, 452, 912
SaqAI	TTAA	5 cut(s)	177, 231, 290, 438, 759
SatI	GCNGC	1 cut(s)	903
Sau3AI	GATC	5 cut(s)	109, 391, 551, 689, 839
Sau96I	GGNCC	2 cut(s)	425, 462
ScaI	AGTACT	1 cut(s)	104
SchI	GAGTC	4 cut(s)	31, 156, 271, 551
ScrFI	CCNGG	4 cut(s)	348, 429, 665, 932
SduI	GDGCHC	1 cut(s)	875
SfaNI	GCATC	5 cut(s)	10, 121, 400, 553, 575
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	2 cut(s)	425, 462
SmlI	CTYRAG	2 cut(s)	176, 629
SmoI	CTYRAG	2 cut(s)	176, 629
SphI	GCATGC	2 cut(s)	383, 789
Sse9I	AATT	4 cut(s)	42, 153, 440, 793
SsiI	CCGC	3 cut(s)	337, 560, 922
StyD4I	CCNGG	4 cut(s)	346, 427, 663, 930
StyI	CCWWGG	1 cut(s)	907
TaaI	ACNGT	3 cut(s)	301, 728, 916
TaqI	TCGA	1 cut(s)	40
TasI	AATT	4 cut(s)	42, 153, 440, 793
TatI	WGTACW	2 cut(s)	102, 180
TfiI	GAWTC	1 cut(s)	648
Tru1I	TTAA	5 cut(s)	177, 231, 290, 438, 759
Tru9I	TTAA	5 cut(s)	177, 231, 290, 438, 759
TscAI	CASTG	2 cut(s)	145, 541
TseFI	GTSAC	3 cut(s)	148, 815, 990
TseI	GCWGC	1 cut(s)	902
Tsp45I	GTSAC	3 cut(s)	148, 815, 990
TspDTI	ATGAA	5 cut(s)	45, 234, 587, 690, 735
TspRI	CASTG	2 cut(s)	145, 541
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	2 cut(s)	425, 462
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	2 cut(s)	383, 789
ZrmI	AGTACT	1 cut(s)	104
Zsp2I	ATGCAT	3 cut(s)	9, 371, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.