Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

37580616 .. 37589239

Gene Structure 8624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG304200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGGGAGGATGGCGAGATCGAAATCTTTCCTCCTTAGATCTGTTCGTGGACGACGAGTGGGGTGGTCAGTTGTTGGTAAGGAACCCAAAGTTGGTTGCGCTCCAAGCTGGGATCCCGAGGCTCGTGTTTGGTTCAGGGTTGATCAGATCGGATCTGGTTCTTCATGGATCCAACCTGGCAATTGGTGGTTTTGGATGCGGAGACTCATCTTCTGGGCTTGGAGATGTTAGCGGAAGGCTGTGGATGGTGGTTCGACCATATTGGACGGGTCGTCGGCAGCGGGTGGCGCGTGGGGGTTGTCTCACTGCTTGGTGTTGTGATGGGTTGACGTTTTACCCTGGTGTGGCGGCGTGGTGGAGGATGGTTATTCTAGTTCCGGAAGGAAAGGATGAGAAGGCCGAACTGGAAGTATACAACTTTACAGGGGAGGGCGGAGTAGCAATTGCCATGTACAACACCGATGAGTCAATCCGTGCTTTTGCAGAAGCTTCTATGAACACAGCTTATGAGAAAAAGTGGCCTCTTTATCTTAGCACAAAAAACACTATTCTGAAGAAGTATGATGGAATTTATGAAGCCCATTGGAAATCCAAGTATGAAGCTGCTGGCATATGGTATGAACATCGTCTCATTGATGATATGGTGGCTTATGCACTTTTTCATCTTTTCTCAGATGCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

228

Amino Acids

25.5

Weight (kDa)

5.84

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	140 - 219	1e-12	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	1 cut(s)	292
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	5 cut(s)	201, 234, 283, 350, 435
AclWI	GGATC	5 cut(s)	109, 122, 162, 165, 178
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	2 cut(s)	94, 346
AhdI	GACNNNNNGTC	1 cut(s)	273
AjnI	CCWGG	2 cut(s)	177, 340
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	4 cut(s)	110, 491, 506, 605
AluI	AGCT	4 cut(s)	110, 491, 506, 605
Alw26I	GTCTC	3 cut(s)	198, 308, 635
AlwI	GGATC	5 cut(s)	109, 122, 162, 165, 178
Ama87I	CYCGRG	1 cut(s)	118
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	2 cut(s)	399, 521
ApeKI	GCWGC	2 cut(s)	280, 605
ApoI	RAATTY	1 cut(s)	570
Asp700I	GAANNNNTTC	1 cut(s)	28
AspLEI	GCGC	2 cut(s)	103, 292
AvaI	CYCGRG	1 cut(s)	118
BamHI	GGATCC	2 cut(s)	114, 170
BauI	CACGAG	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	292, 592
BccI	CCATC	5 cut(s)	6, 241, 317, 358, 560
BciT130I	CCWGG	2 cut(s)	179, 342
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	3 cut(s)	198, 308, 635
BfaI	CTAG	1 cut(s)	374
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	3 cut(s)	281, 351, 606
BlsI	GCNGC	3 cut(s)	282, 352, 607
Bme1390I	CCNGG	2 cut(s)	179, 342
BmeRI	GACNNNNNGTC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	118
BmiI	GGNNCC	3 cut(s)	86, 116, 172
BmrFI	CCNGG	2 cut(s)	179, 342
BmsI	GCATC	2 cut(s)	188, 667
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	119, 340
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 346
Bse1I	ACTGG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	2 cut(s)	179, 342
BseDI	CCNNGG	2 cut(s)	119, 340
BseGI	GGATG	5 cut(s)	17, 203, 252, 369, 397
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	94, 346
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	292, 592
BseYI	CCCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	401, 523
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	94, 346
BsmAI	GTCTC	3 cut(s)	198, 308, 635
BsmBI	CGTCTC	1 cut(s)	635
BsnI	GGCC	2 cut(s)	401, 523
BsoBI	CYCGRG	1 cut(s)	118
Bsp13I	TCCGGA	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	7 cut(s)	19, 40, 114, 144, 149, 154, 170
BspACI	CCGC	5 cut(s)	201, 234, 283, 350, 435
BspANI	GGCC	2 cut(s)	401, 523
BspCNI	CTCAG	1 cut(s)	686
BspEI	TCCGGA	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	3 cut(s)	86, 116, 172
BspPI	GGATC	5 cut(s)	109, 122, 162, 165, 178
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	2 cut(s)	119, 340
BssMI	GATC	7 cut(s)	19, 40, 114, 144, 149, 154, 170
BssNAI	GTATAC	1 cut(s)	415
BssSI	CACGAG	1 cut(s)	125
Bst1107I	GTATAC	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	179, 342
BstAUI	TGTACA	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	3 cut(s)	37, 533, 673
BstF5I	GGATG	5 cut(s)	17, 203, 252, 369, 397
BstFNI	CGCG	1 cut(s)	292
BstHHI	GCGC	2 cut(s)	103, 292
BstKTI	GATC	7 cut(s)	22, 43, 117, 147, 152, 157, 173
BstMAI	GTCTC	3 cut(s)	198, 308, 635
BstMBI	GATC	7 cut(s)	19, 40, 114, 144, 149, 154, 170
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 289
BstNI	CCWGG	2 cut(s)	179, 342
BstSCI	CCNGG	2 cut(s)	177, 340
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	292, 592
BstX2I	RGATCY	4 cut(s)	40, 114, 154, 170
BstYI	RGATCY	4 cut(s)	40, 114, 154, 170
BstZ17I	GTATAC	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	401, 523
BtsCI	GGATG	5 cut(s)	17, 203, 252, 369, 397
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	610
CfoI	GCGC	2 cut(s)	103, 292
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	2 cut(s)	167, 451
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	37, 533, 673
DpnI	GATC	7 cut(s)	21, 42, 116, 146, 151, 156, 172
DpnII	GATC	7 cut(s)	19, 40, 114, 144, 149, 154, 170
DriI	GACNNNNNGTC	1 cut(s)	273
Eam1105I	GACNNNNNGTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	177, 340
Esp3I	CGTCTC	1 cut(s)	635
FaeI	CATG	2 cut(s)	170, 454
FatI	CATG	2 cut(s)	166, 450
FauI	CCCGC	1 cut(s)	276
FauNDI	CATATG	1 cut(s)	614
FbaI	TGATCA	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	281, 351, 606
FokI	GGATG	5 cut(s)	24, 210, 259, 376, 404
Fsp4HI	GCNGC	3 cut(s)	281, 351, 606
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	2 cut(s)	102, 291
GluI	GCNGC	3 cut(s)	281, 351, 606
GsaI	CCCAGC	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	401, 523
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	2 cut(s)	103, 292
Hin1II	CATG	2 cut(s)	170, 454
Hin6I	GCGC	2 cut(s)	101, 290
HinP1I	GCGC	2 cut(s)	101, 290
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	2 cut(s)	206, 467
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	3 cut(s)	52, 330, 415
Hpy188I	TCNGA	4 cut(s)	149, 154, 555, 676
Hpy188III	TCNNGA	2 cut(s)	118, 380
Hpy8I	GTNNAC	3 cut(s)	52, 330, 415
Hpy99I	CGWCG	2 cut(s)	59, 279
HpyAV	CCTTC	3 cut(s)	231, 377, 391
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	485, 656, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 289
HpyF3I	CTNAG	3 cut(s)	37, 533, 673
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	170, 454
HspAI	GCGC	2 cut(s)	101, 290
Kpn2I	TCCGGA	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	7 cut(s)	19, 40, 114, 144, 149, 154, 170
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	2 cut(s)	292, 592
LweI	GCATC	2 cut(s)	188, 667
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	332
MalI	GATC	7 cut(s)	21, 42, 116, 146, 151, 156, 172
MboI	GATC	7 cut(s)	19, 40, 114, 144, 149, 154, 170
MboII	GAAGA	3 cut(s)	155, 204, 568
MfeI	CAATTG	2 cut(s)	183, 444
MflI	RGATCY	4 cut(s)	40, 114, 154, 170
MluCI	AATT	3 cut(s)	183, 444, 570
MlyI	GAGTC	2 cut(s)	200, 476
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	43, 114, 354, 424, 534
MroI	TCCGGA	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	28
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	179, 342
MunI	CAATTG	2 cut(s)	183, 444
MvaI	CCWGG	2 cut(s)	179, 342
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	107, 289
NdeI	CATATG	1 cut(s)	614
NdeII	GATC	7 cut(s)	19, 40, 114, 144, 149, 154, 170
NlaIII	CATG	2 cut(s)	170, 454
NlaIV	GGNNCC	3 cut(s)	86, 116, 172
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	282, 352, 607
PleI	GAGTC	2 cut(s)	200, 475
PpsI	GAGTC	2 cut(s)	200, 475
Psp6I	CCWGG	2 cut(s)	177, 340
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	2 cut(s)	177, 340
PspN4I	GGNNCC	3 cut(s)	86, 116, 172
PsuI	RGATCY	4 cut(s)	40, 114, 154, 170
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SatI	GCNGC	3 cut(s)	281, 351, 606
Sau3AI	GATC	7 cut(s)	19, 40, 114, 144, 149, 154, 170
SchI	GAGTC	2 cut(s)	200, 476
ScrFI	CCNGG	2 cut(s)	179, 342
SetI	ASST	6 cut(s)	112, 180, 335, 493, 508, 607
SfaNI	GCATC	2 cut(s)	188, 667
Sse9I	AATT	3 cut(s)	183, 444, 570
SsiI	CCGC	5 cut(s)	201, 234, 283, 350, 435
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	2 cut(s)	177, 340
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	2 cut(s)	22, 256
TasI	AATT	3 cut(s)	183, 444, 570
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	1 cut(s)	353
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	2 cut(s)	280, 605
TspDTI	ATGAA	6 cut(s)	155, 512, 591, 615, 636, 653
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	570
XmiI	GTMKAC	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	28
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.