Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

55657076 .. 55687220

Gene Structure 30145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG412000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGAACTCCAAAACAAATCACAAAAGCTGAGCATTTGATAAATGAAGTTCTTGCTGAGACCATCAAAACCGCATTGGTAAGGTATCGATTAGCAATGGCGGTGAAGCATGGGCTCCACCGAAACAGGGCCGCCAGATCTCATTCCCTACTGCGGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGTAGAAATGTTCCCCGCCTTGTTCCAGTACTTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTAGTGCTGGAGGGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACCATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCCTCATCGAAATATCCCTCCCCGACGGATATTATGTTGGCCATGACAAGAAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGGTGATGCTGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAACCAACCTATGCAAGTAGAATTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

236

Amino Acids

27.02

Weight (kDa)

9.76

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	255
AciI	CCGC	6 cut(s)	72, 101, 132, 154, 313, 404
AclWI	GGATC	2 cut(s)	390, 528
AcoI	YGGCCR	2 cut(s)	440, 585
AcsI	RAATTY	1 cut(s)	702
AfaI	GTAC	3 cut(s)	158, 274, 327
AfiI	CCNNNNNNNGG	2 cut(s)	127, 153
AgsI	TTSAA	5 cut(s)	217, 223, 367, 496, 545
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	390, 528
Aor13HI	TCCGGA	1 cut(s)	255
AoxI	GGCC	3 cut(s)	129, 440, 585
ApoI	RAATTY	1 cut(s)	702
AspS9I	GGNCC	2 cut(s)	129, 336
AsuHPI	GGTGA	2 cut(s)	115, 650
AvaII	GGWCC	1 cut(s)	336
BalI	TGGCCA	2 cut(s)	442, 587
BanII	GRGCYC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	201
BccI	CCATC	5 cut(s)	71, 326, 479, 616, 641
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	53
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	298
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	1 cut(s)	132
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	133
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	129, 336
BmiI	GGNNCC	2 cut(s)	116, 337
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	4 cut(s)	397, 419, 631, 661
BpmI	CTGGAG	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	458
Bsa29I	ATCGAT	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 153
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	88
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	127, 153
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	21, 48
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	250
BshFI	GGCC	3 cut(s)	131, 442, 587
BshVI	ATCGAT	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	127, 153
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	131, 442, 587
Bso31I	GGTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	137, 395, 533
Bsp1720I	GCTNAGC	1 cut(s)	30
BspACI	CCGC	6 cut(s)	72, 101, 132, 154, 313, 404
BspANI	GGCC	3 cut(s)	131, 442, 587
BspCNI	CTCAG	2 cut(s)	22, 49
BspDI	ATCGAT	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	116, 337
BspPI	GGATC	2 cut(s)	390, 528
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	323
BssMI	GATC	3 cut(s)	137, 395, 533
BssSI	CACGAG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	596
BstDEI	CTNAG	3 cut(s)	30, 57, 452
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	3 cut(s)	140, 398, 536
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	137, 395, 533
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	298
BstX2I	RGATCY	2 cut(s)	137, 533
BstYI	RGATCY	2 cut(s)	137, 533
Bsu15I	ATCGAT	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	131, 442, 587
BsuTUI	ATCGAT	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	129, 336
ClaI	ATCGAT	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	157, 273, 326
CviAII	CATG	3 cut(s)	110, 589, 676
CviJI	RGCY	6 cut(s)	29, 115, 131, 442, 548, 587
CviKI_1	RGCY	6 cut(s)	29, 115, 131, 442, 548, 587
CviQI	GTAC	3 cut(s)	157, 273, 326
DdeI	CTNAG	3 cut(s)	30, 57, 452
DpnI	GATC	3 cut(s)	139, 397, 535
DpnII	GATC	3 cut(s)	137, 395, 533
DraI	TTTAAA	1 cut(s)	267
EaeI	YGGCCR	2 cut(s)	440, 585
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	507
EcoT22I	ATGCAT	2 cut(s)	412, 681
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	3 cut(s)	113, 592, 679
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	3 cut(s)	109, 588, 675
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	131, 442, 587
HapII	CCGG	1 cut(s)	256
Hin1II	CATG	3 cut(s)	113, 592, 679
HinfI	GANTC	3 cut(s)	238, 492, 604
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	2 cut(s)	115, 650
Hpy188I	TCNGA	1 cut(s)	395
Hpy188III	TCNNGA	4 cut(s)	191, 256, 475, 537
Hpy99I	CGWCG	1 cut(s)	574
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	5 cut(s)	179, 410, 621, 679, 695
HpyF3I	CTNAG	3 cut(s)	30, 57, 452
Hsp92II	CATG	3 cut(s)	113, 592, 679
Kpn2I	TCCGGA	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	137, 395, 533
LmnI	GCTCC	1 cut(s)	120
LweI	GCATC	4 cut(s)	397, 419, 631, 661
MaeI	CTAG	1 cut(s)	375
MalI	GATC	3 cut(s)	139, 397, 535
MboI	GATC	3 cut(s)	137, 395, 533
MboII	GAAGA	3 cut(s)	496, 501, 613
MflI	RGATCY	2 cut(s)	137, 533
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	2 cut(s)	442, 587
MluCI	AATT	1 cut(s)	702
MluNI	TGGCCA	2 cut(s)	442, 587
MlyI	GAGTC	2 cut(s)	247, 613
MnlI	CCTC	5 cut(s)	228, 352, 377, 559, 574
Mox20I	TGGCCA	2 cut(s)	442, 587
Mph1103I	ATGCAT	2 cut(s)	412, 681
MroI	TCCGGA	1 cut(s)	255
MscI	TGGCCA	2 cut(s)	442, 587
MseI	TTAA	2 cut(s)	207, 266
Msp20I	TGGCCA	2 cut(s)	442, 587
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
NdeII	GATC	3 cut(s)	137, 395, 533
NlaIII	CATG	3 cut(s)	113, 592, 679
NlaIV	GGNNCC	2 cut(s)	116, 337
NsiI	ATGCAT	2 cut(s)	412, 681
PfeI	GAWTC	1 cut(s)	492
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	2 cut(s)	246, 612
PpsI	GAGTC	2 cut(s)	246, 612
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	116, 337
PspPI	GGNCC	2 cut(s)	129, 336
PsuI	RGATCY	2 cut(s)	137, 533
RsaI	GTAC	3 cut(s)	158, 274, 327
RsaNI	GTAC	3 cut(s)	157, 273, 326
SaqAI	TTAA	2 cut(s)	207, 266
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	3 cut(s)	137, 395, 533
Sau96I	GGNCC	2 cut(s)	129, 336
ScaI	AGTACT	1 cut(s)	327
SchI	GAGTC	2 cut(s)	247, 613
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	31, 86, 292, 363, 692
SfaNI	GCATC	4 cut(s)	397, 419, 631, 661
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	1 cut(s)	702
SsiI	CCGC	6 cut(s)	72, 101, 132, 154, 313, 404
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	88, 554
TasI	AATT	1 cut(s)	702
TatI	WGTACW	1 cut(s)	325
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	2 cut(s)	207, 266
Tru9I	TTAA	2 cut(s)	207, 266
TspDTI	ATGAA	4 cut(s)	60, 210, 431, 534
TspGWI	ACGGA	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	1 cut(s)	702
XspI	CTAG	1 cut(s)	375
ZrmI	AGTACT	1 cut(s)	327
Zsp2I	ATGCAT	2 cut(s)	412, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.