Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

6520132 .. 6520488

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0075800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATGCTTACTCAGTGCTTCCTCCTTGCGCTCTTTGCTCTCCTCCTTCCTCTGGTCGCAGCTGCCAGAGATCCTTCTGAAAACCAAGTTTCAGGTGGTTGGTTTCCCATCAGGAATATCAGTGACCCGAGTGTGCAAGAGATCGCGAAGTGGGCGGTCTCGGAGTATAACCAGCAATCCCATAAGTCGTTGGTGTTCCAAAGCGTAGTTCAGGGCCAGGAACAAGTGGTAGCTGGACTGAATTATAAGCTTGTCATTAGTGTCAAGGATGGAACCTCCACTGTGAATTATGAGGGCTTTGTCTATGACAGACCATGGGAGAAAGTTAGAAAATTGGTCTCCTTTACTAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

8.79

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	35 - 102	4.7e-14	Cystatin domain
SQAPI	PF16845	37 - 116	5e-31	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AccII	CGCG	1 cut(s)	146
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	216
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	3 cut(s)	62, 233, 250
AluI	AGCT	3 cut(s)	62, 233, 250
Alw26I	GTCTC	2 cut(s)	163, 343
AlwI	GGATC	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	59, 62
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	49, 71
BccI	CCATC	2 cut(s)	116, 263
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	163, 343
BfaI	CTAG	1 cut(s)	348
BisI	GCNGC	2 cut(s)	60, 63
BlsI	GCNGC	2 cut(s)	61, 64
Bme1390I	CCNGG	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	218
BsaI	GGTCTC	2 cut(s)	163, 343
BsaJI	CCNNGG	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	49, 71
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	163, 343
BsnI	GGCC	1 cut(s)	216
Bso31I	GGTCTC	2 cut(s)	163, 343
BsoBI	CYCGRG	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	70, 141
Bsp19I	CCATGG	1 cut(s)	314
Bsp68I	TCGCGA	1 cut(s)	146
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	65
BspTNI	GGTCTC	2 cut(s)	163, 343
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	2 cut(s)	70, 141
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	73, 144
BstMAI	GTCTC	2 cut(s)	163, 343
BstMBI	GATC	2 cut(s)	70, 141
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 152
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	49, 71
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	3 cut(s)	20, 127, 279
BtuMI	TCGCGA	1 cut(s)	146
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	214
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	5 cut(s)	62, 216, 233, 250, 297
CviKI_1	RGCY	5 cut(s)	62, 216, 233, 250, 297
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	72, 143
DpnII	GATC	2 cut(s)	70, 141
Eco130I	CCWWGG	1 cut(s)	314
Eco31I	GGTCTC	2 cut(s)	163, 343
Eco88I	CYCGRG	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	1 cut(s)	318
FaiI	YATR	6 cut(s)	168, 183, 246, 291, 306, 316
FatI	CATG	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	60, 63
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	2 cut(s)	60, 63
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	2 cut(s)	60, 63
HaeIII	GGCC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	79, 163
Hpy188III	TCNNGA	2 cut(s)	112, 145
HpyAV	CCTTC	2 cut(s)	56, 84
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 152
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	318
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	70, 141
LpnPI	CCDG	9 cut(s)	38, 78, 79, 97, 185, 197, 203, 219, 230
Lsp1109I	GCAGC	2 cut(s)	49, 71
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	2 cut(s)	72, 143
MboI	GATC	2 cut(s)	70, 141
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	3 cut(s)	241, 286, 332
MnlI	CCTC	5 cut(s)	32, 53, 60, 286, 286
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	35, 152
NcoI	CCATGG	1 cut(s)	314
NdeII	GATC	2 cut(s)	70, 141
NlaIII	CATG	1 cut(s)	318
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	122
NruI	TCGCGA	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	61, 64
PsiI	TTATAA	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	62
RruI	TCGCGA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	60, 63
Sau3AI	GATC	2 cut(s)	70, 141
Sau96I	GGNCC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	5 cut(s)	64, 97, 235, 252, 278
Sse9I	AATT	3 cut(s)	241, 286, 332
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	283
TasI	AATT	3 cut(s)	241, 286, 332
TscAI	CASTG	3 cut(s)	20, 127, 286
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	2 cut(s)	59, 62
Tsp45I	GTSAC	1 cut(s)	122
TspRI	CASTG	3 cut(s)	20, 127, 286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.