Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8372099.1

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1128

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8372099.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 493 bp

atttgaagctgaagggatttggtatgaacaccgtcttattgacgatatggttgcatatgctcttaaaagtgaaggaggttatgtatgggcatgcaaaaattatgatggggatgtgcaaagtgacttggtagcacaaggttttggatctctgggtctgatgacatctatactggtgtgcccagatggaaagaccattgaagctgaagcagcccatggtacagttacccgccattaccgggttcaccaaaaaggaggtgaaaccagcacaaacagcatagcttctatctttgcttggtcacgaggtcttgcacacagggcaaagttggatagcaatgccaggcttttagactttgtggagaaacttgaagcagcttgtgttggaactgttgaatctgggaagatgaccaaggatcttgcgctccttatccatgggcctaaggtccttaggtctcagtatctcaataccgaagaatttattgatgctgtggctgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

164

Amino Acids

17.97

Weight (kDa)

5.35

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	152, 418
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	2 cut(s)	31, 223
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	4 cut(s)	6, 198, 366, 390
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	4 cut(s)	9, 201, 279, 372
AluI	AGCT	4 cut(s)	9, 201, 279, 372
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	2 cut(s)	152, 418
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	2 cut(s)	207, 369
ApoI	RAATTY	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	432, 440
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	234, 267
AvaII	GGWCC	1 cut(s)	440
AxyI	CCTNAGG	2 cut(s)	436, 444
BaeGI	GKGCMC	1 cut(s)	180
BauI	CACGAG	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	219, 381
BccI	CCATC	2 cut(s)	99, 177
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	208, 370
BlsI	GCNGC	2 cut(s)	209, 371
Bme1390I	CCNGG	2 cut(s)	237, 338
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	432, 440
BmrFI	CCNGG	2 cut(s)	237, 338
BmsI	GCATC	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	3 cut(s)	212, 406, 428
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	175
Bse21I	CCTNAGG	2 cut(s)	436, 444
Bse3DI	GCAATG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	3 cut(s)	212, 406, 428
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	2 cut(s)	465, 481
BseNI	ACTGG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	219, 381
BshFI	GGCC	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	454
BsnI	GGCC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	144, 410
Bsp19I	CCATGG	2 cut(s)	212, 428
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	2 cut(s)	464, 482
BspPI	GGATC	2 cut(s)	152, 418
BspTNI	GGTCTC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	212, 406, 428
BssMI	GATC	2 cut(s)	144, 410
BssSI	CACGAG	1 cut(s)	298
BssT1I	CCWWGG	3 cut(s)	212, 406, 428
Bst2BI	CACGAG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	33, 221, 386
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	4 cut(s)	436, 444, 451, 490
BstDSI	CCRYGG	2 cut(s)	212, 428
BstF5I	GGATG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	147, 413
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	2 cut(s)	144, 410
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 271, 315
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	235, 336
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	219, 381
BstX2I	RGATCY	2 cut(s)	144, 410
BstYI	RGATCY	2 cut(s)	144, 410
Bsu36I	CCTNAGG	2 cut(s)	436, 444
BsuRI	GGCC	1 cut(s)	434
BtgI	CCRYGG	2 cut(s)	212, 428
BtsCI	GGATG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	92
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	432, 440
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	91, 213, 429
CviJI	RGCY	8 cut(s)	9, 201, 210, 279, 341, 372, 434, 489
CviKI_1	RGCY	8 cut(s)	9, 201, 210, 279, 341, 372, 434, 489
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	4 cut(s)	436, 444, 451, 490
DpnI	GATC	2 cut(s)	146, 412
DpnII	GATC	2 cut(s)	144, 410
Eco130I	CCWWGG	3 cut(s)	212, 406, 428
Eco31I	GGTCTC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	31, 223
Eco81I	CCTNAGG	2 cut(s)	436, 444
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	3 cut(s)	212, 406, 428
ErhI	CCWWGG	3 cut(s)	212, 406, 428
FaeI	CATG	3 cut(s)	94, 216, 432
FatI	CATG	3 cut(s)	90, 212, 428
FauI	CCCGC	1 cut(s)	234
FauNDI	CATATG	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	208, 370
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	2 cut(s)	208, 370
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	2 cut(s)	208, 370
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	1 cut(s)	236
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	3 cut(s)	94, 216, 432
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	2 cut(s)	234, 267
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	6, 66
HpyCH4III	ACNGT	3 cut(s)	33, 221, 386
HpyCH4V	TGCA	4 cut(s)	54, 94, 116, 309
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 271, 315
HpyF3I	CTNAG	4 cut(s)	436, 444, 451, 490
Hsp92II	CATG	3 cut(s)	94, 216, 432
HspAI	GCGC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	144, 410
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	9 cut(s)	135, 156, 193, 249, 275, 299, 323, 350, 379
Lsp1109I	GCAGC	2 cut(s)	219, 381
LweI	GCATC	1 cut(s)	470
MaeIII	GTNAC	3 cut(s)	120, 221, 295
MalI	GATC	2 cut(s)	146, 412
MboI	GATC	2 cut(s)	144, 410
MboII	GAAGA	2 cut(s)	410, 480
MflI	RGATCY	2 cut(s)	144, 410
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	98, 471
MmeI	TCCRAC	2 cut(s)	304, 359
MnlI	CCTC	3 cut(s)	69, 246, 294
MseI	TTAA	1 cut(s)	64
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	237, 338
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	3 cut(s)	207, 271, 315
NciI	CCSGG	1 cut(s)	237
NcoI	CCATGG	2 cut(s)	212, 428
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	2 cut(s)	144, 410
NlaIII	CATG	3 cut(s)	94, 216, 432
NmuCI	GTSAC	2 cut(s)	120, 295
NspI	RCATGY	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	209, 371
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspPI	GGNCC	2 cut(s)	432, 440
PspPPI	RGGWCCY	1 cut(s)	440
PsuI	RGATCY	2 cut(s)	144, 410
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	64
SatI	GCNGC	2 cut(s)	208, 370
Sau3AI	GATC	2 cut(s)	144, 410
Sau96I	GGNCC	2 cut(s)	432, 440
ScrFI	CCNGG	2 cut(s)	237, 338
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	1 cut(s)	470
SinI	GGWCC	1 cut(s)	440
SphI	GCATGC	1 cut(s)	94
Sse9I	AATT	2 cut(s)	98, 471
SsiI	CCGC	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	235, 336
StyI	CCWWGG	3 cut(s)	212, 406, 428
TaaI	ACNGT	3 cut(s)	33, 221, 386
TasI	AATT	2 cut(s)	98, 471
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	64
Tru9I	TTAA	1 cut(s)	64
TseFI	GTSAC	2 cut(s)	120, 295
TseI	GCWGC	2 cut(s)	207, 369
Tsp45I	GTSAC	2 cut(s)	120, 295
TspDTI	ATGAA	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	471
XceI	RCATGY	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.