Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

17123547 .. 17127502

Gene Structure 3956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG176100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGGCATTCAATAAGATCAAGGTGACCAACCCAATTGTCGAAATGGATGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACAAAGCCAATTTGCATTGGGAGGCATGCCTTTGGTGATCAGTACCGAGCAACTGATGCAATCATAAAAGGACCCGGGAAACTTAAATTAGTTTTTGTACCTGATGGGTCCAATGAGAAGCAAGAATTTGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGACGCATCTATGAACACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGATTCAAGGACATCTTCCAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCTGAAGGGATTTGGTATGAACACCGTCTTATTGACGATATGGTTGCATATGCTCTTAAAAGTGAAGGAGGTTATGTGTGGGCATGCAAAAACTATGATGGGGATGTGCAAAGTGACTTAGTAGCACAAGGTTTTGGATCTCTGGGTCTGATGACATCTATACTGGTGTGCCCAGATGGAAAGACCATTGAAGCTGAAGCAGCCCATGGTACAGTTACCCGCCATTACCGGGTTCACCAAAAAGGAGGTGAAACCAGCACAAACAGCATAGCTTCTATCTTTGCTTGGTCACGAGGTCTTGCACACAGGGCAAAGTTGGATAGCAATGCCAGGCTCTTGGACTTTGTGGAGAAACTTGAAGCAGCTTGTGTTGGAACTGTTGAATCTGGGAAGATGACCAAGGATCTTGCTCTCCTTATCCATGGGCCTAAGGTCCTTAGGTCTCAGTATCTCAATACTGAAGAATTTATTGACGCCGTGGCTGAGGAGCTGAGAGTTAGATTGTTTAGTAGAGCAAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

353

Amino Acids

39.87

Weight (kDa)

8.44

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	11 - 339	3.1e-62	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	3 cut(s)	172, 395, 757
AclWI	GGATC	4 cut(s)	381, 519, 682, 948
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	2 cut(s)	314, 1001
AcuI	CTGAAG	3 cut(s)	561, 753, 1017
AcyI	GRCGYC	1 cut(s)	1011
AfaI	GTAC	4 cut(s)	133, 233, 288, 748
AfiI	CCNNNNNNNGG	1 cut(s)	766
AgsI	TTSAA	9 cut(s)	13, 76, 82, 328, 487, 536, 728, 896, 920
AjnI	CCWGG	3 cut(s)	181, 498, 866
AluBI	AGCT	6 cut(s)	353, 539, 731, 809, 902, 1027
AluI	AGCT	6 cut(s)	353, 539, 731, 809, 902, 1027
Alw26I	GTCTC	1 cut(s)	984
AlwI	GGATC	4 cut(s)	381, 519, 682, 948
Ama87I	CYCGRG	1 cut(s)	263
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	2 cut(s)	431, 962
ApeKI	GCWGC	2 cut(s)	737, 899
ApoI	RAATTY	2 cut(s)	314, 1001
AspS9I	GGNCC	4 cut(s)	260, 297, 962, 970
AsuC2I	CCSGG	3 cut(s)	264, 265, 767
AsuHPI	GGTGA	4 cut(s)	37, 236, 764, 797
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	3 cut(s)	260, 297, 970
AxyI	CCTNAGG	2 cut(s)	966, 974
BaeGI	GKGCMC	1 cut(s)	710
BalI	TGGCCA	1 cut(s)	433
BauI	CACGAG	2 cut(s)	60, 828
BbvCI	CCTCAGC	1 cut(s)	1020
BbvI	GCAGC	2 cut(s)	749, 911
BccI	CCATC	4 cut(s)	287, 470, 629, 707
BceAI	ACGGC	1 cut(s)	998
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BciT130I	CCWGG	3 cut(s)	183, 500, 868
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	3 cut(s)	264, 265, 767
BcoDI	GTCTC	1 cut(s)	984
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	2 cut(s)	738, 900
BlsI	GCNGC	2 cut(s)	739, 901
Bme1390I	CCNGG	6 cut(s)	183, 264, 265, 500, 767, 868
Bme18I	GGWCC	3 cut(s)	260, 297, 970
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	4 cut(s)	260, 297, 962, 970
BmiI	GGNNCC	2 cut(s)	262, 298
BmrFI	CCNGG	6 cut(s)	183, 264, 265, 500, 767, 868
BmsI	GCATC	2 cut(s)	235, 410
BpmI	CTGGAG	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	1020
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	3 cut(s)	264, 265, 767
BsaHI	GRCGYC	1 cut(s)	1011
BsaI	GGTCTC	1 cut(s)	984
BsaJI	CCNNGG	5 cut(s)	263, 742, 936, 958, 1014
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	766
Bse1I	ACTGG	2 cut(s)	340, 705
Bse21I	CCTNAGG	2 cut(s)	966, 974
Bse3DI	GCAATG	1 cut(s)	868
BseAI	TCCGGA	1 cut(s)	114
BseBI	CCWGG	3 cut(s)	183, 500, 868
BseDI	CCNNGG	5 cut(s)	263, 742, 936, 958, 1014
BseGI	GGATG	2 cut(s)	55, 646
BseLI	CCNNNNNNNGG	1 cut(s)	766
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	3 cut(s)	995, 1011, 1019
BseNI	ACTGG	2 cut(s)	340, 705
BseRI	GAGGAG	2 cut(s)	109, 1037
BseSI	GKGCMC	1 cut(s)	710
BseXI	GCAGC	2 cut(s)	749, 911
BshFI	GGCC	2 cut(s)	433, 964
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	3 cut(s)	115, 264, 766
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	766
BsmAI	GTCTC	1 cut(s)	984
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	433, 964
Bso31I	GGTCTC	1 cut(s)	984
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	710
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	6 cut(s)	18, 226, 386, 524, 674, 940
Bsp19I	CCATGG	2 cut(s)	742, 958
BspACI	CCGC	3 cut(s)	172, 395, 757
BspANI	GGCC	2 cut(s)	433, 964
BspCNI	CTCAG	3 cut(s)	994, 1012, 1020
BspEI	TCCGGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	262, 298
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	4 cut(s)	381, 519, 682, 948
BspTNI	GGTCTC	1 cut(s)	984
BsrDI	GCAATG	1 cut(s)	868
BsrI	ACTGG	2 cut(s)	340, 705
BssECI	CCNNGG	5 cut(s)	263, 742, 936, 958, 1014
BssMI	GATC	6 cut(s)	18, 226, 386, 524, 674, 940
BssNI	GRCGYC	1 cut(s)	1011
BssSI	CACGAG	2 cut(s)	60, 828
BssT1I	CCWWGG	3 cut(s)	742, 936, 958
Bst2BI	CACGAG	2 cut(s)	60, 828
Bst2UI	CCWGG	3 cut(s)	183, 500, 868
Bst4CI	ACNGT	4 cut(s)	136, 563, 751, 916
BstACI	GRCGYC	1 cut(s)	1011
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	216, 622
BstDEI	CTNAG	7 cut(s)	443, 655, 966, 974, 981, 1020, 1028
BstDSI	CCRYGG	3 cut(s)	742, 958, 1014
BstEII	GGTNACC	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	55, 646
BstKTI	GATC	6 cut(s)	21, 229, 389, 527, 677, 943
BstMAI	GTCTC	1 cut(s)	984
BstMBI	GATC	6 cut(s)	18, 226, 386, 524, 674, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 737, 801, 845
BstNI	CCWGG	3 cut(s)	183, 500, 868
BstNSI	RCATGY	2 cut(s)	218, 624
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	6 cut(s)	181, 262, 263, 498, 765, 866
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	710
BstV1I	GCAGC	2 cut(s)	749, 911
BstX2I	RGATCY	3 cut(s)	524, 674, 940
BstXI	CCANNNNNNTGG	1 cut(s)	874
BstYI	RGATCY	3 cut(s)	524, 674, 940
Bsu36I	CCTNAGG	2 cut(s)	966, 974
BsuRI	GGCC	2 cut(s)	433, 964
BtgI	CCRYGG	3 cut(s)	742, 958, 1014
BtsCI	GGATG	2 cut(s)	55, 646
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	369, 411
Cac8I	GCNNGC	2 cut(s)	216, 622
Cfr13I	GGNCC	4 cut(s)	260, 297, 962, 970
Cfr9I	CCCGGG	1 cut(s)	263
CseI	GACGC	2 cut(s)	407, 1019
Csp6I	GTAC	4 cut(s)	132, 232, 287, 747
CviAII	CATG	4 cut(s)	215, 621, 743, 959
CviQI	GTAC	4 cut(s)	132, 232, 287, 747
DdeI	CTNAG	7 cut(s)	443, 655, 966, 974, 981, 1020, 1028
DpnI	GATC	6 cut(s)	20, 228, 388, 526, 676, 942
DpnII	GATC	6 cut(s)	18, 226, 386, 524, 674, 940
DraI	TTTAAA	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	431
Eco130I	CCWWGG	3 cut(s)	742, 936, 958
Eco31I	GGTCTC	1 cut(s)	984
Eco47I	GGWCC	3 cut(s)	260, 297, 970
Eco57I	CTGAAG	3 cut(s)	561, 753, 1017
Eco81I	CCTNAGG	2 cut(s)	966, 974
Eco88I	CYCGRG	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	25
EcoO109I	RGGNCCY	2 cut(s)	260, 970
EcoO65I	GGTNACC	1 cut(s)	25
EcoRII	CCWGG	3 cut(s)	181, 498, 866
EcoT14I	CCWWGG	3 cut(s)	742, 936, 958
ErhI	CCWWGG	3 cut(s)	742, 936, 958
FaeI	CATG	4 cut(s)	218, 624, 746, 962
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	4 cut(s)	214, 620, 742, 958
FauI	CCCGC	2 cut(s)	179, 764
FauNDI	CATATG	1 cut(s)	586
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	738, 900
FokI	GGATG	2 cut(s)	62, 653
Fsp4HI	GCNGC	2 cut(s)	738, 900
GluI	GCNGC	2 cut(s)	738, 900
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	433, 964
HapII	CCGG	3 cut(s)	115, 264, 766
HgaI	GACGC	2 cut(s)	407, 1019
Hin1I	GRCGYC	1 cut(s)	1011
Hin1II	CATG	4 cut(s)	218, 624, 746, 962
HinfI	GANTC	4 cut(s)	97, 377, 483, 920
HpaII	CCGG	3 cut(s)	115, 264, 766
HphI	GGTGA	4 cut(s)	37, 236, 764, 797
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	2 cut(s)	386, 687
Hpy188III	TCNNGA	4 cut(s)	115, 466, 528, 828
Hpy8I	GTNNAC	1 cut(s)	772
HpyAV	CCTTC	2 cut(s)	536, 596
HpyCH4III	ACNGT	4 cut(s)	136, 563, 751, 916
HpyCH4V	TGCA	7 cut(s)	159, 204, 248, 584, 624, 646, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 737, 801, 845
HpyF3I	CTNAG	7 cut(s)	443, 655, 966, 974, 981, 1020, 1028
Hsp92I	GRCGYC	1 cut(s)	1011
Hsp92II	CATG	4 cut(s)	218, 624, 746, 962
Kpn2I	TCCGGA	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	6 cut(s)	18, 226, 386, 524, 674, 940
LmnI	GCTCC	1 cut(s)	1024
Lsp1109I	GCAGC	2 cut(s)	749, 911
LweI	GCATC	2 cut(s)	235, 410
MaeIII	GTNAC	4 cut(s)	25, 650, 751, 825
MalI	GATC	6 cut(s)	20, 228, 388, 526, 676, 942
MboI	GATC	6 cut(s)	18, 226, 386, 524, 674, 940
MboII	GAAGA	4 cut(s)	487, 492, 940, 1010
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	3 cut(s)	524, 674, 940
MhlI	GDGCHC	1 cut(s)	710
MlsI	TGGCCA	1 cut(s)	433
MluCI	AATT	5 cut(s)	36, 198, 275, 314, 1001
MluNI	TGGCCA	1 cut(s)	433
MlyI	GAGTC	2 cut(s)	106, 386
MmeI	TCCRAC	3 cut(s)	167, 834, 889
MnlI	CCTC	8 cut(s)	87, 204, 313, 338, 599, 776, 824, 1015
Mox20I	TGGCCA	1 cut(s)	433
MroI	TCCGGA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	433
MseI	TTAA	4 cut(s)	66, 125, 273, 594
Msp20I	TGGCCA	1 cut(s)	433
MspI	CCGG	3 cut(s)	115, 264, 766
MspR9I	CCNGG	6 cut(s)	183, 264, 265, 500, 767, 868
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	8
MvaI	CCWGG	3 cut(s)	183, 500, 868
MwoI	GCNNNNNNNGC	4 cut(s)	245, 737, 801, 845
NciI	CCSGG	3 cut(s)	264, 265, 767
NcoI	CCATGG	2 cut(s)	742, 958
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	6 cut(s)	18, 226, 386, 524, 674, 940
NlaIII	CATG	4 cut(s)	218, 624, 746, 962
NlaIV	GGNNCC	2 cut(s)	262, 298
NmuCI	GTSAC	3 cut(s)	25, 650, 825
NspI	RCATGY	2 cut(s)	218, 624
PaeI	GCATGC	2 cut(s)	218, 624
PctI	GAATGC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	483, 920
PfoI	TCCNGGA	1 cut(s)	498
PkrI	GCNGC	2 cut(s)	739, 901
PleI	GAGTC	2 cut(s)	105, 385
PpsI	GAGTC	2 cut(s)	105, 385
PpuMI	RGGWCCY	2 cut(s)	260, 970
Psp5II	RGGWCCY	2 cut(s)	260, 970
Psp6I	CCWGG	3 cut(s)	181, 498, 866
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	3 cut(s)	181, 498, 866
PspN4I	GGNNCC	2 cut(s)	262, 298
PspPI	GGNCC	4 cut(s)	260, 297, 962, 970
PspPPI	RGGWCCY	2 cut(s)	260, 970
PsrI	GAACNNNNNNTAC	2 cut(s)	401, 433
PstI	CTGCAG	1 cut(s)	161
PsuI	RGATCY	3 cut(s)	524, 674, 940
RsaI	GTAC	4 cut(s)	133, 233, 288, 748
RsaNI	GTAC	4 cut(s)	132, 232, 287, 747
SaqAI	TTAA	4 cut(s)	66, 125, 273, 594
SatI	GCNGC	2 cut(s)	738, 900
Sau3AI	GATC	6 cut(s)	18, 226, 386, 524, 674, 940
Sau96I	GGNCC	4 cut(s)	260, 297, 962, 970
SchI	GAGTC	2 cut(s)	106, 386
ScrFI	CCNGG	6 cut(s)	183, 264, 265, 500, 767, 868
SduI	GDGCHC	1 cut(s)	710
SfaNI	GCATC	2 cut(s)	235, 410
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	3 cut(s)	260, 297, 970
SmaI	CCCGGG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SphI	GCATGC	2 cut(s)	218, 624
Sse9I	AATT	5 cut(s)	36, 198, 275, 314, 1001
SsiI	CCGC	3 cut(s)	172, 395, 757
StyD4I	CCNGG	6 cut(s)	181, 262, 263, 498, 765, 866
StyI	CCWWGG	3 cut(s)	742, 936, 958
TaaI	ACNGT	4 cut(s)	136, 563, 751, 916
TaqI	TCGA	1 cut(s)	42
TasI	AATT	5 cut(s)	36, 198, 275, 314, 1001
TfiI	GAWTC	2 cut(s)	483, 920
Tru1I	TTAA	4 cut(s)	66, 125, 273, 594
Tru9I	TTAA	4 cut(s)	66, 125, 273, 594
TscAI	CASTG	2 cut(s)	376, 418
TseFI	GTSAC	3 cut(s)	25, 650, 825
TseI	GCWGC	2 cut(s)	737, 899
Tsp45I	GTSAC	3 cut(s)	25, 650, 825
TspDTI	ATGAA	4 cut(s)	69, 422, 525, 570
TspMI	CCCGGG	1 cut(s)	263
TspRI	CASTG	2 cut(s)	376, 418
VpaK11BI	GGWCC	3 cut(s)	260, 297, 970
XapI	RAATTY	2 cut(s)	314, 1001
XceI	RCATGY	2 cut(s)	218, 624
XmaI	CCCGGG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.