Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

21792681 .. 21793640

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18520.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTTGCTTATGCTCTCAAAAGTGGAGGAGGTTATGTTTGGGCATGCAAAAATTATGATGGGGATGTGCAAAGTGACTTCTTAGCCCAAGGTTTTGGATCTCCGGGGCTGATGACATCTATGCTGGTGTGCCCAGATGGAAAGGCCATCGAAGCTGAAGCAGCCCATGGTACAGTAACCCGCCATTACCGGGTCCACCAGAAAGGAGGCGAAACAAGCACAAACAGCATAGCTTCGATCTTTGCATGGTCACAAGGTCTTGCACACAGGGCAAAGTTAGATGGCAATGCCAGACTCTTAGATTTTACAGAGAAACTTGAAGCATCTTGCGTGGGAACTGTCGAAACTGGGAAGATGACCAAGGATATTGCACTCCTCATCCATGGCCCTAAGTGTTGTCGAGAGTCGTATTTTGTTGGCAACTTTCAGATGCGTTTTCTGTTTCTGTATGACAAAAAGTTTCATGGTTCGTGTAGGGTAACTAGGTCTCAGCATCTGAATACCGAAGACTTCATTGACGCCGTGGCTGATGAGTTGAGAGTTAGATTGTCTAGCAGAGACAAAGTTGTAATCTCCGATTCAACAAGCAAAAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

200

Amino Acids

21.95

Weight (kDa)

8.71

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	519
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	320, 582
AluBI	AGCT	2 cut(s)	155, 233
AluI	AGCT	2 cut(s)	155, 233
Alw26I	GTCTC	2 cut(s)	492, 552
AlwI	GGATC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	496
AoxI	GGCC	2 cut(s)	144, 385
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	193, 386
AsuC2I	CCSGG	2 cut(s)	105, 191
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	4 cut(s)	53, 131, 155, 275
BceAI	ACGGC	1 cut(s)	506
BcnI	CCSGG	2 cut(s)	105, 191
BcoDI	GTCTC	2 cut(s)	492, 552
BfaI	CTAG	2 cut(s)	483, 552
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	105, 191
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	193, 386
BmiI	GGNNCC	1 cut(s)	194
BmrFI	CCNGG	2 cut(s)	105, 191
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	3 cut(s)	332, 420, 502
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	513
BpuMI	CCSGG	2 cut(s)	105, 191
BsaHI	GRCGYC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	6 cut(s)	88, 104, 166, 360, 382, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	292
BseDI	CCNNGG	6 cut(s)	88, 104, 166, 360, 382, 522
BseGI	GGATG	2 cut(s)	70, 378
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	42, 365
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	2 cut(s)	146, 387
BsiSI	CCGG	2 cut(s)	104, 190
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	492, 552
BsnI	GGCC	2 cut(s)	146, 387
Bso31I	GGTCTC	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	98, 237
Bsp19I	CCATGG	2 cut(s)	166, 382
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	2 cut(s)	146, 387
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	6 cut(s)	88, 104, 166, 360, 382, 522
BssMI	GATC	2 cut(s)	98, 237
BssNI	GRCGYC	1 cut(s)	519
BssT1I	CCWWGG	4 cut(s)	88, 166, 360, 382
Bst4CI	ACNGT	2 cut(s)	175, 340
BstACI	GRCGYC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	4 cut(s)	82, 298, 390, 489
BstDSI	CCRYGG	3 cut(s)	166, 382, 522
BstF5I	GGATG	2 cut(s)	70, 378
BstKTI	GATC	2 cut(s)	101, 240
BstMAI	GTCTC	2 cut(s)	492, 552
BstMBI	GATC	2 cut(s)	98, 237
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 161, 216, 225, 269
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	103, 189
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	146, 387
BtgI	CCRYGG	3 cut(s)	166, 382, 522
BtsCI	GGATG	2 cut(s)	70, 378
Cac8I	GCNNGC	1 cut(s)	46
CaiI	CAGNNNCTG	1 cut(s)	496
Cfr13I	GGNCC	2 cut(s)	193, 386
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	5 cut(s)	45, 167, 246, 383, 464
CviJI	RGCY	8 cut(s)	86, 109, 146, 155, 164, 233, 387, 527
CviKI_1	RGCY	8 cut(s)	86, 109, 146, 155, 164, 233, 387, 527
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	4 cut(s)	82, 298, 390, 489
DpnI	GATC	2 cut(s)	100, 239
DpnII	GATC	2 cut(s)	98, 237
Eco130I	CCWWGG	4 cut(s)	88, 166, 360, 382
Eco31I	GGTCTC	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	177
EcoT14I	CCWWGG	4 cut(s)	88, 166, 360, 382
ErhI	CCWWGG	4 cut(s)	88, 166, 360, 382
FaeI	CATG	5 cut(s)	48, 170, 249, 386, 467
FatI	CATG	5 cut(s)	44, 166, 245, 382, 463
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	2 cut(s)	77, 365
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	483, 552
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	146, 387
HapII	CCGG	2 cut(s)	104, 190
HgaI	GACGC	1 cut(s)	527
Hin1I	GRCGYC	1 cut(s)	519
Hin1II	CATG	5 cut(s)	48, 170, 249, 386, 467
HinfI	GANTC	3 cut(s)	294, 404, 578
HpaII	CCGG	2 cut(s)	104, 190
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	429, 498, 577
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	196
HpyCH4III	ACNGT	2 cut(s)	175, 340
HpyCH4V	TGCA	5 cut(s)	48, 70, 245, 263, 371
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 161, 216, 225, 269
HpyF3I	CTNAG	4 cut(s)	82, 298, 390, 489
Hsp92I	GRCGYC	1 cut(s)	519
Hsp92II	CATG	5 cut(s)	48, 170, 249, 386, 467
Kzo9I	GATC	2 cut(s)	98, 237
LpnPI	CCDG	8 cut(s)	110, 117, 147, 203, 212, 253, 304, 333
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	3 cut(s)	332, 420, 502
MaeI	CTAG	2 cut(s)	483, 552
MaeIII	GTNAC	4 cut(s)	74, 175, 249, 478
MalI	GATC	2 cut(s)	100, 239
MboI	GATC	2 cut(s)	98, 237
MboII	GAAGA	2 cut(s)	364, 518
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	2 cut(s)	288, 413
MnlI	CCTC	4 cut(s)	20, 23, 200, 386
MspI	CCGG	2 cut(s)	104, 190
MspR9I	CCNGG	2 cut(s)	105, 191
MwoI	GCNNNNNNNGC	5 cut(s)	152, 161, 216, 225, 269
NciI	CCSGG	2 cut(s)	105, 191
NcoI	CCATGG	2 cut(s)	166, 382
NdeII	GATC	2 cut(s)	98, 237
NlaIII	CATG	5 cut(s)	48, 170, 249, 386, 467
NlaIV	GGNNCC	1 cut(s)	194
NmuCI	GTSAC	2 cut(s)	74, 249
NspI	RCATGY	1 cut(s)	48
PaeI	GCATGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	578
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	2 cut(s)	288, 412
PpsI	GAGTC	2 cut(s)	288, 412
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	2 cut(s)	193, 386
PstNI	CAGNNNCTG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	98, 237
Sau96I	GGNCC	2 cut(s)	193, 386
SchI	GAGTC	2 cut(s)	288, 413
ScrFI	CCNGG	2 cut(s)	105, 191
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	7 cut(s)	34, 94, 157, 235, 259, 488, 599
SfaNI	GCATC	3 cut(s)	332, 420, 502
SinI	GGWCC	1 cut(s)	193
SphI	GCATGC	1 cut(s)	48
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	2 cut(s)	483, 552
StyD4I	CCNGG	2 cut(s)	103, 189
StyI	CCWWGG	4 cut(s)	88, 166, 360, 382
TaaI	ACNGT	2 cut(s)	175, 340
TaqI	TCGA	4 cut(s)	150, 236, 342, 400
TasI	AATT	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	578
TseFI	GTSAC	2 cut(s)	74, 249
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	2 cut(s)	74, 249
TspDTI	ATGAA	2 cut(s)	452, 502
VpaK11BI	GGWCC	1 cut(s)	193
XceI	RCATGY	1 cut(s)	48
XspI	CTAG	2 cut(s)	483, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.