Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

35111368 .. 35113273

Gene Structure 1906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45222

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATGCATTGTTTCCATGATGCAGGAGATGAAATGACTCGAATTTTCTGGAAATCTATAAAAGATAAGTACTTTGATCTTGGCCTCCCTAATGGTGATGCCACCAATGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTAGCAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGAGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCACTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCCTCATCGAAATATCGGAGATCCAGATTTGAAGCCTCATCGAAATATCCCTCCCCGACGGATATTCTGTTGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

208

Amino Acids

23.93

Weight (kDa)

9.11

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	18 - 169	7.3e-17	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	246
AciI	CCGC	2 cut(s)	304, 425
AclWI	GGATC	3 cut(s)	411, 530, 563
AcoI	YGGCCR	2 cut(s)	461, 620
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	3 cut(s)	71, 149, 265
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	6 cut(s)	125, 208, 214, 358, 547, 580
AluBI	AGCT	2 cut(s)	137, 383
AluI	AGCT	2 cut(s)	137, 383
AlwI	GGATC	3 cut(s)	411, 530, 563
Aor13HI	TCCGGA	1 cut(s)	246
AoxI	GGCC	3 cut(s)	82, 461, 620
ApoI	RAATTY	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	327
BalI	TGGCCA	2 cut(s)	463, 622
BauI	CACGAG	1 cut(s)	192
BccI	CCATC	2 cut(s)	317, 500
BfmI	CTRYAG	1 cut(s)	289
BfrI	CTTAAG	1 cut(s)	143
BmcAI	AGTACT	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	1 cut(s)	328
BmsI	GCATC	4 cut(s)	10, 88, 418, 440
BpmI	CTGGAG	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	479
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bse1I	ACTGG	1 cut(s)	370
BseAI	TCCGGA	1 cut(s)	246
BseGI	GGATG	1 cut(s)	433
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	84, 463, 622
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	84, 463, 622
Bsp13I	TCCGGA	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	76, 416, 535, 568
BspACI	CCGC	2 cut(s)	304, 425
BspANI	GGCC	3 cut(s)	84, 463, 622
BspEI	TCCGGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	1 cut(s)	293
BspPI	GGATC	3 cut(s)	411, 530, 563
BspTI	CTTAAG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	370
BssMI	GATC	4 cut(s)	76, 416, 535, 568
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	268
BstAFI	CTTAAG	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	4 cut(s)	79, 419, 538, 571
BstMBI	GATC	4 cut(s)	76, 416, 535, 568
BstSFI	CTRYAG	1 cut(s)	289
BstX2I	RGATCY	2 cut(s)	535, 568
BstYI	RGATCY	2 cut(s)	535, 568
BsuRI	GGCC	3 cut(s)	84, 463, 622
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	70, 148, 264
CviAII	CATG	2 cut(s)	17, 624
CviJI	RGCY	7 cut(s)	84, 137, 383, 463, 550, 583, 622
CviKI_1	RGCY	7 cut(s)	84, 137, 383, 463, 550, 583, 622
CviQI	GTAC	3 cut(s)	70, 148, 264
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	4 cut(s)	78, 418, 537, 570
DpnII	GATC	4 cut(s)	76, 416, 535, 568
DraI	TTTAAA	1 cut(s)	258
EaeI	YGGCCR	2 cut(s)	461, 620
Eco47I	GGWCC	1 cut(s)	327
EcoT22I	ATGCAT	2 cut(s)	9, 433
FaeI	CATG	2 cut(s)	20, 627
FaiI	YATR	9 cut(s)	18, 59, 176, 348, 396, 437, 504, 521, 625
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	16, 623
FauI	CCCGC	1 cut(s)	311
FokI	GGATG	1 cut(s)	440
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	3 cut(s)	84, 463, 622
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	2 cut(s)	20, 627
HinfI	GANTC	4 cut(s)	37, 114, 229, 407
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	416, 566
Hpy188III	TCNNGA	6 cut(s)	49, 182, 247, 496, 539, 572
Hpy99I	CGWCG	1 cut(s)	609
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	6 cut(s)	7, 23, 131, 170, 291, 431
HpyF3I	CTNAG	1 cut(s)	473
Hsp92II	CATG	2 cut(s)	20, 627
Kpn2I	TCCGGA	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	76, 416, 535, 568
LweI	GCATC	4 cut(s)	10, 88, 418, 440
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	4 cut(s)	78, 418, 537, 570
MboI	GATC	4 cut(s)	76, 416, 535, 568
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	2 cut(s)	535, 568
MlsI	TGGCCA	2 cut(s)	463, 622
MluCI	AATT	2 cut(s)	42, 120
MluNI	TGGCCA	2 cut(s)	463, 622
MlyI	GAGTC	4 cut(s)	31, 123, 238, 416
MnlI	CCTC	7 cut(s)	95, 219, 343, 368, 561, 594, 609
Mox20I	TGGCCA	2 cut(s)	463, 622
Mph1103I	ATGCAT	2 cut(s)	9, 433
MroI	TCCGGA	1 cut(s)	246
MscI	TGGCCA	2 cut(s)	463, 622
MseI	TTAA	3 cut(s)	144, 198, 257
Msp20I	TGGCCA	2 cut(s)	463, 622
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	1 cut(s)	247
MunI	CAATTG	1 cut(s)	120
NdeII	GATC	4 cut(s)	76, 416, 535, 568
NlaIII	CATG	2 cut(s)	20, 627
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	2 cut(s)	9, 433
PleI	GAGTC	4 cut(s)	31, 122, 237, 415
PpsI	GAGTC	4 cut(s)	31, 122, 237, 415
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	535, 568
RsaI	GTAC	3 cut(s)	71, 149, 265
RsaNI	GTAC	3 cut(s)	70, 148, 264
SaqAI	TTAA	3 cut(s)	144, 198, 257
Sau3AI	GATC	4 cut(s)	76, 416, 535, 568
Sau96I	GGNCC	1 cut(s)	327
ScaI	AGTACT	1 cut(s)	71
SchI	GAGTC	4 cut(s)	31, 123, 238, 416
SetI	ASST	5 cut(s)	139, 283, 322, 354, 385
SfaNI	GCATC	4 cut(s)	10, 88, 418, 440
SfcI	CTRYAG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	143, 494
SmoI	CTYRAG	2 cut(s)	143, 494
Sse9I	AATT	2 cut(s)	42, 120
SsiI	CCGC	2 cut(s)	304, 425
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	3 cut(s)	40, 556, 589
TasI	AATT	2 cut(s)	42, 120
TatI	WGTACW	2 cut(s)	69, 147
Tru1I	TTAA	3 cut(s)	144, 198, 257
Tru9I	TTAA	3 cut(s)	144, 198, 257
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	4 cut(s)	45, 201, 452, 536
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	1 cut(s)	406
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	327
XapI	RAATTY	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	71
Zsp2I	ATGCAT	2 cut(s)	9, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.