Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Reverse (-)

25386258 .. 25388175

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018107

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTTCCCCGCCTTGTTCCAGGTTGGACGAGGCCAATATGCATTGGGAGGCATGCTTTCGGTGATCATACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGGGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATTCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGAGTTACTGCTGTAGATGATCGTTACCAGATTGGAATCTACACTGTACGTAAGATTCAATACGGTGAAGAGATCACATTGGACTACAACTCTATTAAGGAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

123

Amino Acids

13.84

Weight (kDa)

5.4

Isoelectric Point (pI)

13.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	36 - 97	7.1e-06	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 176
AcoI	YGGCCR	1 cut(s)	212
AfaI	GTAC	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	109, 320
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AoxI	GGCC	2 cut(s)	31, 212
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	73, 338
AvaII	GGWCC	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	214
BccI	CCATC	2 cut(s)	68, 251
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	169, 191
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	33, 214
BsnI	GGCC	2 cut(s)	33, 214
Bsp143I	GATC	3 cut(s)	63, 280, 333
BspACI	CCGC	2 cut(s)	9, 176
BspANI	GGCC	2 cut(s)	33, 214
BspLI	GGNNCC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	3 cut(s)	63, 280, 333
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	307, 326
Bst6I	CTCTTC	2 cut(s)	256, 324
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	3 cut(s)	66, 283, 336
BstMBI	GATC	3 cut(s)	63, 280, 333
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	273
BstSNI	TACGTA	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	33, 214
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	150, 303
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	3 cut(s)	33, 134, 214
CviKI_1	RGCY	3 cut(s)	33, 134, 214
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	3 cut(s)	65, 282, 335
DpnII	GATC	3 cut(s)	63, 280, 333
EaeI	YGGCCR	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	256, 324
EarI	CTCTTC	2 cut(s)	256, 324
Eco105I	TACGTA	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	18
EcoT22I	ATGCAT	2 cut(s)	43, 184
FaeI	CATG	1 cut(s)	55
FaiI	YATR	7 cut(s)	39, 53, 68, 99, 147, 188, 255
FatI	CATG	1 cut(s)	51
FauI	CCCGC	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	63
FokI	GGATG	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	33, 214
Hin1II	CATG	1 cut(s)	55
HinfI	GANTC	4 cut(s)	158, 168, 297, 316
HphI	GGTGA	2 cut(s)	73, 338
Hpy188I	TCNGA	2 cut(s)	167, 368
Hpy188III	TCNNGA	1 cut(s)	247
HpyCH4III	ACNGT	2 cut(s)	307, 326
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	41, 182
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 280, 333
LpnPI	CCDG	7 cut(s)	5, 32, 84, 102, 108, 215, 302
LweI	GCATC	2 cut(s)	169, 191
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	265, 284
MalI	GATC	3 cut(s)	65, 282, 335
MboI	GATC	3 cut(s)	63, 280, 333
MboII	GAAGA	2 cut(s)	273, 341
MlsI	TGGCCA	1 cut(s)	214
MluNI	TGGCCA	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	5 cut(s)	23, 41, 94, 119, 355
Mox20I	TGGCCA	1 cut(s)	214
Mph1103I	ATGCAT	2 cut(s)	43, 184
MscI	TGGCCA	1 cut(s)	214
MseI	TTAA	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
NdeII	GATC	3 cut(s)	63, 280, 333
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	79
NsiI	ATGCAT	2 cut(s)	43, 184
NspI	RCATGY	1 cut(s)	55
PaeI	GCATGC	1 cut(s)	55
PfeI	GAWTC	3 cut(s)	168, 297, 316
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	357
Sau3AI	GATC	3 cut(s)	63, 280, 333
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	6 cut(s)	24, 73, 105, 136, 313, 366
SfaNI	GCATC	2 cut(s)	169, 191
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SnaBI	TACGTA	1 cut(s)	311
SphI	GCATGC	1 cut(s)	55
SsiI	CCGC	2 cut(s)	9, 176
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	307, 326
TaiI	ACGT	1 cut(s)	313
TfiI	GAWTC	3 cut(s)	168, 297, 316
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	2 cut(s)	157, 310
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	157, 310
VpaK11BI	GGWCC	1 cut(s)	78
XceI	RCATGY	1 cut(s)	55
Zsp2I	ATGCAT	2 cut(s)	43, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.