Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

39235175 .. 39236637

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTGGAGGAGTCCCAATGGGACTGTTAGGAATATTTTGAATGGTTGGACGAAGCCAATATGCATTGGAAGGCATGTTTTCGTTCCGGAAGGAAAGGATGAGAAGGCCGAACTGGAAGTATACAACTTTACAGGGGAGGGCGGAGTAGCAATTGCCATGTACAACACCGATGAGTCAATCCGTGCTTTTGCAGAAGCTTCTATGAACACAGCTTATGAGAAAAAGTGGCCTCTTTATCTTAGCACAAAAAACACTATTCTGAAGAAGTATGATGGAATTTATGAAGCCCATTGGAAATCCAAGTATGAAGCTGCTGGCATATGGTATGAACATCGTCTCATTGATGATATGGTGGCTTATGCACTTTTTCATCTTTTCTCAGATGCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

130

Amino Acids

14.99

Weight (kDa)

6.07

Isoelectric Point (pI)

21.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	18 - 121	3.5e-14	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	3 cut(s)	197, 212, 311
AluI	AGCT	3 cut(s)	197, 212, 311
Alw26I	GTCTC	1 cut(s)	341
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	2 cut(s)	105, 227
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	341
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
BmsI	GCATC	1 cut(s)	373
BsaWI	WCCGGW	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	85
BseGI	GGATG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	2 cut(s)	107, 229
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	341
BsmBI	CGTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	107, 229
Bsp13I	TCCGGA	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	159
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	2 cut(s)	107, 229
BspCNI	CTCAG	1 cut(s)	392
BspEI	TCCGGA	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	117
BssNAI	GTATAC	1 cut(s)	121
Bst1107I	GTATAC	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	239, 379
BstF5I	GGATG	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	298
BstZ17I	GTATAC	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	107, 229
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	2 cut(s)	74, 157
CviJI	RGCY	8 cut(s)	55, 107, 197, 212, 229, 287, 311, 356
CviKI_1	RGCY	8 cut(s)	55, 107, 197, 212, 229, 287, 311, 356
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	239, 379
EciI	GGCGGA	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	281
EcoT22I	ATGCAT	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	2 cut(s)	77, 160
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	73, 156
FauNDI	CATATG	1 cut(s)	320
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	107, 229
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	2 cut(s)	77, 160
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	2 cut(s)	10, 173
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	261, 382
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	63, 83, 97
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	63, 191, 362, 386
HpyF3I	CTNAG	2 cut(s)	239, 379
Hsp92II	CATG	2 cut(s)	77, 160
Kpn2I	TCCGGA	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	98, 99, 117, 300
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	373
MboII	GAAGA	1 cut(s)	274
MfeI	CAATTG	1 cut(s)	150
MluCI	AATT	2 cut(s)	150, 276
MlyI	GAGTC	2 cut(s)	19, 182
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	2 cut(s)	130, 240
Mph1103I	ATGCAT	1 cut(s)	65
MroI	TCCGGA	1 cut(s)	85
MspI	CCGG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	320
NlaIII	CATG	2 cut(s)	77, 160
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	2 cut(s)	18, 181
PpsI	GAGTC	2 cut(s)	18, 181
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SatI	GCNGC	1 cut(s)	312
SchI	GAGTC	2 cut(s)	19, 182
SetI	ASST	3 cut(s)	199, 214, 313
SfaNI	GCATC	1 cut(s)	373
SgeI	CNNG	8 cut(s)	86, 98, 125, 144, 169, 194, 313, 327
Sse9I	AATT	2 cut(s)	150, 276
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	2 cut(s)	150, 276
TatI	WGTACW	1 cut(s)	159
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	5 cut(s)	218, 297, 321, 342, 359
TspGWI	ACGGA	1 cut(s)	170
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.