AT2G31957

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001299
Physical Location & Seq
Forward (+)
13587675 .. 13588258
584 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31957.1

Sequence Viewer

Length: 255 bp
ATGAAGAGCTCTACTACCTCTATGCAGTTAATTCCAACACTTTTCTTCTTAACCATTCTTCTTGCTTCACCAGATATAGAGATGGTTGAAGGACAACAAATGTGTGAAGCAAAGAGCTTGGACTGGAAGGGTATGTGTCTGAAATGGAGGAATTGTCGCCAAGTATGCATTAGCGAAGGTTTCACTGACGGTCGTTGCAAAGGATTCACCCGCAAATGCATTTGTAGCAAACCTTGTTTTGTCCTTCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

84

Amino Acids

9.53

Weight (kDa)

8.7

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 33 - 79 3.4e-19 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 211
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 2 cut(s) 9, 117
AluI AGCT 2 cut(s) 9, 117
Alw21I GWGCWC 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 60, 199
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 11
BccI CCATC 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bse1I ACTGG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 11
BspACI CCGC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 191
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 165, 225
BtsIMutI CAGTG 1 cut(s) 183
CviJI RGCY 2 cut(s) 9, 117
CviKI_1 RGCY 2 cut(s) 9, 117
Ecl136II GAGCTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 9
EcoT22I ATGCAT 2 cut(s) 170, 221
EcoT38I GRGCYC 1 cut(s) 11
FaiI YATR 4 cut(s) 23, 77, 134, 166
FauI CCCGC 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 11
HinfI GANTC 1 cut(s) 204
HphI GGTGA 2 cut(s) 60, 199
Hpy188I TCNGA 1 cut(s) 141
HpyAV CCTTC 4 cut(s) 83, 121, 170, 254
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 4 cut(s) 25, 168, 198, 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 225
LpnPI CCDG 2 cut(s) 84, 109
MboII GAAGA 3 cut(s) 16, 37, 50
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 30, 151, 250
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 2 cut(s) 28, 141
Mph1103I ATGCAT 2 cut(s) 170, 221
MseI TTAA 3 cut(s) 29, 50, 253
MwoI GCNNNNNNNGC 2 cut(s) 165, 225
NsiI ATGCAT 2 cut(s) 170, 221
PfeI GAWTC 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 11
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 3 cut(s) 29, 50, 253
SduI GDGCHC 1 cut(s) 11
SetI ASST 5 cut(s) 11, 20, 119, 181, 235
SgeI CNNG 7 cut(s) 74, 83, 130, 136, 173, 222, 246
Sse9I AATT 3 cut(s) 30, 151, 250
SsiI CCGC 1 cut(s) 211
SstI GAGCTC 1 cut(s) 11
TaaI ACNGT 1 cut(s) 191
TasI AATT 3 cut(s) 30, 151, 250
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 3 cut(s) 29, 50, 253
Tru9I TTAA 3 cut(s) 29, 50, 253
TscAI CASTG 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 190
Zsp2I ATGCAT 2 cut(s) 170, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.