Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001299

Physical Location & Seq

Genomic Coordinates Reverse (-)

78232013 .. 78233933

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGACCGCTCCATGCGTTTGTTTTCAGCTGCTCTCATCCTAGCCATTCTTGTACTGGCTACAGAGATTGGACCAATAGCTGTTGAGGCAGGTAGGACATGTCAGTCTCCGAGCCATAAGTTCTCCGGAATGTGCTTCTTCTCCGGCAATTGTGCAAAAATTTGCAAACAAGAAGGCTTCCTTGGAGGTGATTGCGGTGGCTTCCGCCGAGCTGCTCATGCTTCGAACAAGTTGACCGGCGAAATTCCGGCAAACTACGCGAAGTGCCCGACGCCGACCCCCTTCGGGGTCAACAACAACCGCCTCTCGGTGTGGTTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

107

Amino Acids

11.5

Weight (kDa)

9.3

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	32 - 70	1.7e-11	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31953 AT2G31957
fragaria_vesca	FvH4_1g21320 FvH4_6g22740
malus_domestica	MD02G1207600.v1.1 MD11G1108400.v1.1 MD11G1108800.v1.1 MD11G1113600.v1.1 MD12G1061400.v1.1 MD12G1061700.v1.1 MD12G1121400.v1.1 MD13G1011400.v1.1 MD13G1011500.v1.1 MD13G1011600.v1.1 MD13G1011700.v1.1 MD13G1011800.v1.1 MD13G1012000.v1.1 MD13G1012100.v1.1 MD14G1061400.v1.1 MD14G1061900.v1.1 MD14G1062000.v1.1 MD14G1062100.v1.1 MD14G1073000.v1.1 MD16G1008800.v1.1 MD16G1008900.v1.1
prunus_persica	Prupe.1G341600_v2.0.a1 Prupe.1G341700_v2.0.a1 Prupe.7G070800_v2.0.a1 Prupe.7G070800_v2.0.a1 Prupe.7G070900_v2.0.a1 Prupe.7G071000_v2.0.a1 Prupe.7G071100_v2.0.a1 Prupe.7G071200_v2.0.a1 Prupe.7G071300_v2.0.a1 Prupe.7G071400_v2.0.a1 Prupe.7G073300_v2.0.a1
pyrus_communis	pycom11g08960 pycom11g08970 pycom12g12050 pycom13g00950 pycom13g00960 pycom13g00970 pycom13g00990 pycom16g00850
rosa_chinensis	RchiOBHm_Chr2g0115151
rosa_roxburghii	Rroxscaffold_2G00130630 Rroxscaffold_2G00139970 Rroxscaffold_6G00401520
rosa_rugosa	Rorug02G0111600 Rorug02G0194100 Rorug03G0183000
rosa_samantha	Rh2BG262100 Rh3BG267000
rosa_wichuraiana	Rw2G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
Acc36I	ACCTGC	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	9
AccII	CGCG	1 cut(s)	260
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	5 cut(s)	7, 195, 205, 301, 319
AcsI	RAATTY	2 cut(s)	159, 243
AcyI	GRCGYC	1 cut(s)	272
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	3 cut(s)	285, 286, 307
AflIII	ACRYGT	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	3 cut(s)	29, 80, 212
AluI	AGCT	3 cut(s)	29, 80, 212
Alw26I	GTCTC	1 cut(s)	111
Aor13HI	TCCGGA	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	29, 212
ApoI	RAATTY	2 cut(s)	159, 243
AspS9I	GGNCC	2 cut(s)	4, 71
AsuHPI	GGTGA	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	4, 71
BaeGI	GKGCMC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	16, 199
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	41, 322
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	80
BisI	GCNGC	2 cut(s)	30, 213
BlsI	GCNGC	2 cut(s)	31, 214
Bme18I	GGWCC	2 cut(s)	4, 71
BmgT120I	GGNCC	2 cut(s)	4, 71
BmiI	GGNNCC	1 cut(s)	317
Bpu14I	TTCGAA	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	3 cut(s)	285, 286, 307
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	285, 286, 307
BseNI	ACTGG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	16, 199
Bsh1236I	CGCG	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	126, 144, 237, 248
BslI	CCNNNNNNNGG	3 cut(s)	285, 286, 307
BsmAI	GTCTC	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp13I	TCCGGA	1 cut(s)	125
BspACI	CCGC	5 cut(s)	7, 195, 205, 301, 319
BspEI	TCCGGA	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	317
BspMI	ACCTGC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	260
BstMAI	GTCTC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 218, 257
BstNSI	RCATGY	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	16, 199
BtsCI	GGATG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	4, 71
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	3 cut(s)	13, 99, 218
CviJI	RGCY	8 cut(s)	29, 44, 59, 80, 114, 177, 201, 212
CviKI_1	RGCY	8 cut(s)	29, 44, 59, 80, 114, 177, 201, 212
CviQI	GTAC	1 cut(s)	53
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	4, 71
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	16, 102, 221
FaiI	YATR	4 cut(s)	14, 100, 117, 219
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	3 cut(s)	12, 98, 217
Fnu4HI	GCNGC	2 cut(s)	30, 213
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	30, 213
FspBI	CTAG	2 cut(s)	41, 322
GluI	GCNGC	2 cut(s)	30, 213
HapII	CCGG	4 cut(s)	126, 144, 237, 248
HgaI	GACGC	1 cut(s)	280
Hin1I	GRCGYC	1 cut(s)	272
Hin1II	CATG	3 cut(s)	16, 102, 221
HincII	GTYRAC	2 cut(s)	234, 292
HindII	GTYRAC	2 cut(s)	234, 292
HpaII	CCGG	4 cut(s)	126, 144, 237, 248
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	234, 292
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	126
Hpy8I	GTNNAC	2 cut(s)	234, 292
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	167, 292
HpyCH4V	TGCA	2 cut(s)	155, 165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 218, 257
Hsp92I	GRCGYC	1 cut(s)	272
Hsp92II	CATG	3 cut(s)	16, 102, 221
Kpn2I	TCCGGA	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	6 cut(s)	41, 75, 139, 157, 250, 261
Lsp1109I	GCAGC	2 cut(s)	16, 199
MaeI	CTAG	2 cut(s)	41, 322
MbiI	CCGCTC	1 cut(s)	9
MboII	GAAGA	1 cut(s)	130
MfeI	CAATTG	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	3 cut(s)	148, 159, 243
MnlI	CCTC	3 cut(s)	79, 179, 314
MroI	TCCGGA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	4 cut(s)	126, 144, 237, 248
MunI	CAATTG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	86, 218, 257
NlaIII	CATG	3 cut(s)	16, 102, 221
NlaIV	GGNNCC	1 cut(s)	317
NmeAIII	GCCGAG	1 cut(s)	233
NspI	RCATGY	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	224
PciI	ACATGT	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	31, 214
PscI	ACATGT	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	4, 71
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SatI	GCNGC	2 cut(s)	30, 213
Sau96I	GGNCC	2 cut(s)	4, 71
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	5 cut(s)	31, 82, 94, 190, 214
SfcI	CTRYAG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	2 cut(s)	4, 71
Sse9I	AATT	3 cut(s)	148, 159, 243
SsiI	CCGC	5 cut(s)	7, 195, 205, 301, 319
SspMI	CTAG	2 cut(s)	41, 322
StyI	CCWWGG	1 cut(s)	181
TaqI	TCGA	1 cut(s)	224
TasI	AATT	3 cut(s)	148, 159, 243
TatI	WGTACW	1 cut(s)	52
TseI	GCWGC	2 cut(s)	29, 212
VpaK11BI	GGWCC	2 cut(s)	4, 71
XapI	RAATTY	2 cut(s)	159, 243
XceI	RCATGY	1 cut(s)	102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XspI	CTAG	2 cut(s)	41, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.