Prupe.1G341700_v2.0.a1

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001299
Physical Location & Seq
Forward (+)
32113131 .. 32113692
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G341700.1

Sequence Viewer

Length: 264 bp
ATGGAAAGTTCAATGCGTCTTGTTTCCGCCGCCTTGGTTCTTGCCCTGCTTTTGGTGGCTACCGAGATAGAACCAATGGCTGTCGAGGGAAGGAGCGCTAAGAAGGTTGAGCCAAAGAAGAGGACCTGCGAGAGTCAGAGCCAAAAATTCAAGGGAATTTGCTTCTTGTCGAGCAACTGTGCCACGAGTTGCACAACAGAGGGCTTCAATGGAGGCCAATGCCGTGGCTTCCGCCGTAGATGCTTCTGCTCCAAAGCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

88

Amino Acids

9.48

Weight (kDa)

9.22

Isoelectric Point (pI)

71.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 134
AciI CCGC 3 cut(s) 27, 30, 232
AcsI RAATTY 2 cut(s) 146, 156
AfeI AGCGCT 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 3 cut(s) 12, 151, 208
Aor51HI AGCGCT 1 cut(s) 97
AoxI GGCC 1 cut(s) 214
ApoI RAATTY 2 cut(s) 146, 156
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 123
AvaII GGWCC 1 cut(s) 123
BauI CACGAG 1 cut(s) 184
BceAI ACGGC 2 cut(s) 207, 219
BfoI RGCGCY 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
BmsI GCATC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 33, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseDI CCNNGG 2 cut(s) 33, 223
BseLI CCNNNNNNNGG 1 cut(s) 52
BshFI GGCC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 52
BsnI GGCC 1 cut(s) 216
BspACI CCGC 3 cut(s) 27, 30, 232
BspANI GGCC 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 33, 223
BssSI CACGAG 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 223
BveI ACCTGC 1 cut(s) 134
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 123
CseI GACGC 1 cut(s) 5
CviAII CATG 1 cut(s) 258
CviJI RGCY 7 cut(s) 59, 80, 112, 141, 204, 216, 228
CviKI_1 RGCY 7 cut(s) 59, 80, 112, 141, 204, 216, 228
DdeI CTNAG 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 2 cut(s) 16, 221
Eco130I CCWWGG 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 123
Eco47III AGCGCT 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 261
FaiI YATR 1 cut(s) 259
FatI CATG 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 30
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 1 cut(s) 216
HgaI GACGC 1 cut(s) 5
HhaI GCGC 1 cut(s) 98
Hin1II CATG 1 cut(s) 261
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 84, 97
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 1 cut(s) 261
HspAI GCGC 1 cut(s) 96
LmnI GCTCC 2 cut(s) 93, 254
LpnPI CCDG 2 cut(s) 59, 139
LweI GCATC 1 cut(s) 230
MboII GAAGA 1 cut(s) 130
MluCI AATT 2 cut(s) 146, 156
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 4 cut(s) 79, 114, 193, 206
MseI TTAA 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 240
NlaIII CATG 1 cut(s) 261
NspI RCATGY 1 cut(s) 261
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
PpuMI RGGWCCY 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 123
PspPI GGNCC 1 cut(s) 123
PspPPI RGGWCCY 1 cut(s) 123
SaqAI TTAA 1 cut(s) 262
SatI GCNGC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 1 cut(s) 142
SetI ASST 2 cut(s) 108, 128
SfaNI GCATC 1 cut(s) 230
SinI GGWCC 1 cut(s) 123
Sse9I AATT 2 cut(s) 146, 156
SsiI CCGC 3 cut(s) 27, 30, 232
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 84, 170
TasI AATT 2 cut(s) 146, 156
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 262
Tru9I TTAA 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 2 cut(s) 146, 156
XceI RCATGY 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.