Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001299

Physical Location & Seq

Genomic Coordinates Reverse (-)

711057 .. 711607

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1012100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAGCGTTCAATGCGTCTTGTTTCAGCCTCCTTCGTTCTTGTCTTGCTTTTGGTCGCTACCGAGATGGGGACAATGGGTGTTGAGGCAAGGAGCAAGTCAAGCAAGGTAGTTGAGGAAAGGACCTGCGAGGCTGCAAGCGGCAAGTTCAAGGGGTTGTGCTTTTCGTCTAACAACTGTAAACACACTTGCAAAAGAGAGCAATTCACCGGAGGCAAATGTCGTGGCTTCCGCCGTAGGTGCATGTGCAACAAAAAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

88

Amino Acids

9.72

Weight (kDa)

9.74

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	41 - 87	1.6e-15	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31953 AT2G31957
fragaria_vesca	FvH4_1g21320 FvH4_6g22740
malus_domestica	MD02G1207600.v1.1 MD11G1108400.v1.1 MD11G1108800.v1.1 MD11G1113600.v1.1 MD12G1061400.v1.1 MD12G1061700.v1.1 MD12G1121400.v1.1 MD13G1011400.v1.1 MD13G1011500.v1.1 MD13G1011600.v1.1 MD13G1011700.v1.1 MD13G1011800.v1.1 MD13G1012000.v1.1 MD13G1012100.v1.1 MD14G1061400.v1.1 MD14G1061900.v1.1 MD14G1062000.v1.1 MD14G1062100.v1.1 MD14G1073000.v1.1 MD16G1008800.v1.1 MD16G1008900.v1.1
prunus_persica	Prupe.1G341600_v2.0.a1 Prupe.1G341700_v2.0.a1 Prupe.7G070800_v2.0.a1 Prupe.7G070800_v2.0.a1 Prupe.7G070900_v2.0.a1 Prupe.7G071000_v2.0.a1 Prupe.7G071100_v2.0.a1 Prupe.7G071200_v2.0.a1 Prupe.7G071300_v2.0.a1 Prupe.7G071400_v2.0.a1 Prupe.7G073300_v2.0.a1
pyrus_communis	pycom11g08960 pycom11g08970 pycom12g12050 pycom13g00950 pycom13g00960 pycom13g00970 pycom13g00990 pycom16g00850
rosa_chinensis	RchiOBHm_Chr2g0115151
rosa_roxburghii	Rroxscaffold_2G00130630 Rroxscaffold_2G00139970 Rroxscaffold_6G00401520
rosa_rugosa	Rorug02G0111600 Rorug02G0194100 Rorug03G0183000
rosa_samantha	Rh2BG262100 Rh3BG267000
rosa_wichuraiana	Rw2G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AciI	CCGC	2 cut(s)	141, 232
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	12, 151
ApeKI	GCWGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	135, 142
BlsI	GCNGC	2 cut(s)	136, 143
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	85
BspACI	CCGC	2 cut(s)	141, 232
BspMI	ACCTGC	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 102, 240
BstNSI	RCATGY	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	123
CseI	GACGC	1 cut(s)	5
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	3 cut(s)	29, 134, 228
CviKI_1	RGCY	3 cut(s)	29, 134, 228
EciI	GGCGGA	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	123
FaeI	CATG	1 cut(s)	247
FaiI	YATR	1 cut(s)	245
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	135, 142
Fsp4HI	GCNGC	2 cut(s)	135, 142
GluI	GCNGC	2 cut(s)	135, 142
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	247
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	4 cut(s)	137, 192, 243, 249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 102, 240
Hsp92II	CATG	1 cut(s)	247
LmnI	GCTCC	2 cut(s)	4, 93
LpnPI	CCDG	2 cut(s)	139, 223
Lsp1109I	GCAGC	1 cut(s)	121
MluCI	AATT	1 cut(s)	203
MnlI	CCTC	5 cut(s)	40, 79, 109, 124, 206
MspI	CCGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	13, 102, 240
NlaIII	CATG	1 cut(s)	247
NspI	RCATGY	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	136, 143
PpuMI	RGGWCCY	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	123
PspPPI	RGGWCCY	1 cut(s)	123
SatI	GCNGC	2 cut(s)	135, 142
Sau96I	GGNCC	1 cut(s)	123
SetI	ASST	3 cut(s)	111, 128, 242
SinI	GGWCC	1 cut(s)	123
Sse9I	AATT	1 cut(s)	203
SsiI	CCGC	2 cut(s)	141, 232
TaaI	ACNGT	1 cut(s)	179
TasI	AATT	1 cut(s)	203
TauI	GCSGC	1 cut(s)	144
TseI	GCWGC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	123
XceI	RCATGY	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.