Rroxscaffold_2G00130630

N-glycan processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001299
Physical Location & Seq
Reverse (-)
66852861 .. 66853221
361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130630.1

Sequence Viewer

Length: 237 bp
ATGGACCGTTCAATACGTCTAGCTGCCTTCCTTCTCGTCCTGGTTCTCATGCTGGTAGAGATGGGGCCGACAATTGTTGCCGGGGAAAATCCGAGGACATGTGATTCTCCGAGTGGCAAGTTCAAGGGACCTTGCATTATAAGTAGAAACTGCGCTCTTACCTGCCAAAAAGAAGGCTTCGCCGGCGGCCATTGCCGCGATTTCCTACGAAAATGCTACTGCGCTAAACCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
PRKCSH-like

Protein Analysis

78

Amino Acids

8.51

Weight (kDa)

8.9

Isoelectric Point (pI)

22.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 32 - 78 1.2e-17 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 170
AccII CGCG 1 cut(s) 198
AciI CCGC 2 cut(s) 186, 196
AcoI YGGCCR 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 2 cut(s) 12, 124
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AoxI GGCC 2 cut(s) 65, 187
ApeKI GCWGC 1 cut(s) 23
AspLEI GCGC 2 cut(s) 155, 224
AspS9I GGNCC 3 cut(s) 4, 65, 128
AsuC2I CCSGG 1 cut(s) 82
AvaII GGWCC 2 cut(s) 4, 128
BbvI GCAGC 1 cut(s) 10
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 1 cut(s) 82
BfaI CTAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 170
BisI GCNGC 3 cut(s) 24, 187, 196
BlsI GCNGC 3 cut(s) 25, 188, 197
Bme1390I CCNGG 2 cut(s) 41, 82
Bme18I GGWCC 2 cut(s) 4, 128
BmgT120I GGNCC 3 cut(s) 4, 65, 128
BmiI GGNNCC 2 cut(s) 66, 129
BmrFI CCNGG 2 cut(s) 41, 82
BpuMI CCSGG 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 81, 92
Bse118I RCCGGY 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 81, 92
BseMI GCAATG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 67, 189
BsiSI CCGG 2 cut(s) 81, 183
BslFI GGGAC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 2 cut(s) 67, 189
BspACI CCGC 2 cut(s) 186, 196
BspANI GGCC 2 cut(s) 67, 189
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 66, 129
BspMI ACCTGC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 2 cut(s) 81, 92
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 184
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 2 cut(s) 155, 224
BstMWI GCNNNNNNNGC 3 cut(s) 183, 192, 195
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 2 cut(s) 39, 80
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 10
BsuRI GGCC 2 cut(s) 67, 189
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 184
CfoI GCGC 2 cut(s) 155, 224
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 3 cut(s) 4, 65, 128
CviAII CATG 2 cut(s) 49, 99
CviJI RGCY 4 cut(s) 23, 67, 177, 189
CviKI_1 RGCY 4 cut(s) 23, 67, 177, 189
EaeI YGGCCR 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 4, 128
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 39
FaeI CATG 2 cut(s) 52, 102
FaiI YATR 3 cut(s) 50, 100, 140
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 48, 98
Fnu4HI GCNGC 3 cut(s) 24, 187, 196
Fsp4HI GCNGC 3 cut(s) 24, 187, 196
FspBI CTAG 1 cut(s) 20
GlaI GCGC 2 cut(s) 154, 223
GluI GCNGC 3 cut(s) 24, 187, 196
HaeIII GGCC 2 cut(s) 67, 189
HapII CCGG 2 cut(s) 81, 183
HhaI GCGC 2 cut(s) 155, 224
Hin1II CATG 2 cut(s) 52, 102
Hin6I GCGC 2 cut(s) 153, 222
HinP1I GCGC 2 cut(s) 153, 222
HinfI GANTC 1 cut(s) 104
HpaII CCGG 2 cut(s) 81, 183
Hpy188I TCNGA 2 cut(s) 93, 111
HpyAV CCTTC 3 cut(s) 37, 41, 167
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 192, 195
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 2 cut(s) 52, 102
HspAI GCGC 2 cut(s) 153, 222
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
LpnPI CCDG 6 cut(s) 26, 38, 53, 94, 175, 196
Lsp1109I GCAGC 1 cut(s) 10
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 16
MfeI CAATTG 1 cut(s) 72
MluCI AATT 1 cut(s) 72
MnlI CCTC 1 cut(s) 87
MreI CGCCGGCG 1 cut(s) 182
MroNI GCCGGC 1 cut(s) 182
MspI CCGG 2 cut(s) 81, 183
MspR9I CCNGG 2 cut(s) 41, 82
MunI CAATTG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 183, 192, 195
NaeI GCCGGC 1 cut(s) 184
NciI CCSGG 1 cut(s) 82
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 2 cut(s) 52, 102
NlaIV GGNNCC 2 cut(s) 66, 129
NspI RCATGY 1 cut(s) 102
PciI ACATGT 1 cut(s) 98
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 25, 188, 197
PpuMI RGGWCCY 1 cut(s) 128
PscI ACATGT 1 cut(s) 98
PsiI TTATAA 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 66, 129
PspPI GGNCC 3 cut(s) 4, 65, 128
PspPPI RGGWCCY 1 cut(s) 128
SatI GCNGC 3 cut(s) 24, 187, 196
Sau96I GGNCC 3 cut(s) 4, 65, 128
ScrFI CCNGG 2 cut(s) 41, 82
SetI ASST 5 cut(s) 19, 25, 133, 164, 232
SgrAI CRCCGGYG 1 cut(s) 182
SinI GGWCC 2 cut(s) 4, 128
Sse9I AATT 1 cut(s) 72
SsiI CCGC 2 cut(s) 186, 196
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 39, 80
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 19
TasI AATT 1 cut(s) 72
TauI GCSGC 2 cut(s) 189, 198
TfiI GAWTC 1 cut(s) 104
TseI GCWGC 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 4, 128
XceI RCATGY 1 cut(s) 102
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.