Rh3BG267000

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001299
Physical Location & Seq
Reverse (-)
25898682 .. 25898977
296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG267000.1

Sequence Viewer

Length: 168 bp
ATGGCAAATTCCATGCGTTTATTTTCATCAACCTTCATACCCATCTTGCTTCTGGTTGCTATAGAGATGGCGCCAAGAGTCGCTGAGGGTAAGAGTACAGCTGCCGATATTAAACCGAGGACATGCGAGTCTTTGAGCCACAAATTCAAGGGAATGTGCATCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

55

Amino Acids

6.0

Weight (kDa)

9.3

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 70
AcsI RAATTY 2 cut(s) 7, 143
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 97
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 2 cut(s) 101, 165
AluI AGCT 2 cut(s) 101, 165
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 2 cut(s) 7, 143
AspLEI GCGC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 88
BccI CCATC 2 cut(s) 50, 61
BfaI CTAG 1 cut(s) 166
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 74
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 88
BshNI GGYRCC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 96
CviAII CATG 2 cut(s) 13, 123
CviJI RGCY 3 cut(s) 101, 138, 165
CviKI_1 RGCY 3 cut(s) 101, 138, 165
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 84
DinI GGCGCC 1 cut(s) 72
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
EgeI GGCGCC 1 cut(s) 72
EheI GGCGCC 1 cut(s) 72
FaeI CATG 2 cut(s) 16, 126
FaiI YATR 4 cut(s) 14, 38, 62, 124
FatI CATG 2 cut(s) 12, 122
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 166
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 74
HhaI GCGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 2 cut(s) 16, 126
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 2 cut(s) 78, 128
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 2 cut(s) 16, 126
HspAI GCGC 1 cut(s) 71
KasI GGCGCC 1 cut(s) 70
LpnPI CCDG 1 cut(s) 38
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 1 cut(s) 166
MluCI AATT 2 cut(s) 7, 143
Mly113I GGCGCC 1 cut(s) 71
MlyI GAGTC 2 cut(s) 87, 137
MnlI CCTC 2 cut(s) 79, 111
MseI TTAA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 101
NarI GGCGCC 1 cut(s) 71
NlaIII CATG 2 cut(s) 16, 126
NlaIV GGNNCC 1 cut(s) 72
NspI RCATGY 1 cut(s) 126
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 2 cut(s) 86, 136
PluTI GGCGCC 1 cut(s) 74
PpsI GAGTC 2 cut(s) 86, 136
PspN4I GGNNCC 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 102
SchI GAGTC 2 cut(s) 87, 137
SetI ASST 3 cut(s) 35, 103, 167
SfcI CTRYAG 1 cut(s) 60
SfoI GGCGCC 1 cut(s) 72
SgeI CNNG 8 cut(s) 25, 58, 65, 87, 129, 135, 139, 160
Sse9I AATT 2 cut(s) 7, 143
SspDI GGCGCC 1 cut(s) 70
SspMI CTAG 1 cut(s) 166
TasI AATT 2 cut(s) 7, 143
TatI WGTACW 1 cut(s) 95
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 15, 25
XapI RAATTY 2 cut(s) 7, 143
XceI RCATGY 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XspI CTAG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.