MD13G1011600.v1.1

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0001299
Physical Location & Seq
Reverse (-)
697726 .. 698631
906 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1011600.v1.1.491

Sequence Viewer

Length: 252 bp
ATGCGTCTTGTTTCAGCCACCTTCATCCTTGTCCTACTTTTTTCCGCTACCGAGATGGGGCCAATGGGTGTTGAGGCAAGGAGCAAGTCAGGCAAGGCAGTTAAGGAAAGGACATGCGAGGCTACAAGCGGCAAGTTCAAGGGGATGTGCTTTTCGTCTACCAACTGTAAAAACACCTGCAAAACGGAAAAATTTATTGGAGGCGAATGTCATGGCTTCCGTCGTAGATGCATATGCAATAAAAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

84

Amino Acids

9.14

Weight (kDa)

9.57

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 37 - 83 3.4e-16 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 185
AccI GTMKAC 1 cut(s) 158
AciI CCGC 2 cut(s) 45, 129
AcsI RAATTY 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AoxI GGCC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 59
BccI CCATC 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 60
BmsI GCATC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 24, 150
BseLI CCNNNNNNNGG 1 cut(s) 57
BshFI GGCC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 57
BsnI GGCC 1 cut(s) 61
BspACI CCGC 2 cut(s) 45, 129
BspANI GGCC 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 167
BstF5I GGATG 2 cut(s) 24, 150
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNSI RCATGY 1 cut(s) 117
BsuRI GGCC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 24, 150
BveI ACCTGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 2 cut(s) 114, 212
CviJI RGCY 4 cut(s) 17, 61, 122, 216
CviKI_1 RGCY 4 cut(s) 17, 61, 122, 216
EcoT22I ATGCAT 1 cut(s) 233
FaeI CATG 2 cut(s) 117, 215
FaiI YATR 4 cut(s) 115, 213, 233, 235
FatI CATG 2 cut(s) 113, 211
FauNDI CATATG 1 cut(s) 233
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 2 cut(s) 11, 157
Fsp4HI GCNGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 2 cut(s) 117, 215
Hpy166II GTNNAC 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 180, 231, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 117, 215
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 2 cut(s) 75, 190
LweI GCATC 1 cut(s) 218
MluCI AATT 1 cut(s) 191
MnlI CCTC 3 cut(s) 67, 112, 194
Mph1103I ATGCAT 1 cut(s) 233
MseI TTAA 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeI CATATG 1 cut(s) 233
NlaIII CATG 2 cut(s) 117, 215
NlaIV GGNNCC 1 cut(s) 60
NsiI ATGCAT 1 cut(s) 233
NspI RCATGY 1 cut(s) 117
PaqCI CACCTGC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 59
SetI ASST 2 cut(s) 23, 179
SfaNI GCATC 1 cut(s) 218
Sse9I AATT 1 cut(s) 191
SsiI CCGC 2 cut(s) 45, 129
TaaI ACNGT 1 cut(s) 167
TasI AATT 1 cut(s) 191
TauI GCSGC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 13
TspGWI ACGGA 2 cut(s) 200, 209
XapI RAATTY 1 cut(s) 191
XceI RCATGY 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.