MD12G1061400.v1.1

Belongs to the DEFL family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
7150431 .. 7151124
694 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1061400.v1.1.491

Sequence Viewer

Length: 273 bp
ATGGAGCGTTCCGGGCGTTTGTTTTCAACTATCTTCATCCTCATCTTACTTTTGGTGGCTATTGGAACGGGGCCAATGGTTACTGAGGGGAAGACAAACGAGAACTCGTCAAAGAATGAGAAGTCATCGAAGATTTGTGAGTCTCCGAGCCATAAATACCGCGGTATTTGCTTTCGGTCAAGCAATTGTGCAACTACATGCAAAAAAGAGGGATTTATGGGAGGCAAATGTGCTGGCTTCCGGATGAGATGTGTATGCACTAAAAAATGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

91

Amino Acids

9.9

Weight (kDa)

9.53

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 44 - 90 6.2e-16 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 162
AccIII TCCGGA 1 cut(s) 240
AciI CCGC 2 cut(s) 160, 162
AgsI TTSAA 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 240
AoxI GGCC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 36, 249
BseMII CTCAG 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 73
BsiSI CCGG 2 cut(s) 12, 241
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 73
Bsp13I TCCGGA 1 cut(s) 240
BspACI CCGC 2 cut(s) 160, 162
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 76
BspEI TCCGGA 1 cut(s) 240
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 36, 249
BstFNI CGCG 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 13, 168
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 11
BstUI CGCG 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 36, 249
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 71
Cfr42I CCGCGG 1 cut(s) 163
CviAII CATG 1 cut(s) 198
CviJI RGCY 4 cut(s) 59, 73, 150, 237
CviKI_1 RGCY 4 cut(s) 59, 73, 150, 237
DdeI CTNAG 1 cut(s) 84
FaeI CATG 1 cut(s) 201
FaiI YATR 4 cut(s) 153, 199, 218, 256
FatI CATG 1 cut(s) 197
FokI GGATG 2 cut(s) 23, 256
HaeIII GGCC 1 cut(s) 73
HapII CCGG 2 cut(s) 12, 241
Hin1II CATG 1 cut(s) 201
HinfI GANTC 1 cut(s) 140
HpaII CCGG 2 cut(s) 12, 241
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 191, 201, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 168
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 1 cut(s) 201
Kpn2I TCCGGA 1 cut(s) 240
KspI CCGCGG 1 cut(s) 163
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 25, 219, 254
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 3 cut(s) 25, 103, 142
MfeI CAATTG 1 cut(s) 184
MluCI AATT 1 cut(s) 184
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 4 cut(s) 50, 79, 202, 215
MroI TCCGGA 1 cut(s) 240
MseI TTAA 1 cut(s) 271
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 2 cut(s) 12, 241
MspR9I CCNGG 1 cut(s) 13
MunI CAATTG 1 cut(s) 184
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 13, 168
NciI CCSGG 1 cut(s) 13
NlaIII CATG 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 72
NspI RCATGY 1 cut(s) 201
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 71
SacII CCGCGG 1 cut(s) 163
SaqAI TTAA 1 cut(s) 271
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 163
SgrBI CCGCGG 1 cut(s) 163
Sse9I AATT 1 cut(s) 184
SsiI CCGC 2 cut(s) 160, 162
StyD4I CCNGG 1 cut(s) 11
TaqI TCGA 1 cut(s) 128
TaqII GACCGA 1 cut(s) 165
TasI AATT 1 cut(s) 184
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 25
XceI RCATGY 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.