Prupe.7G073300_v2.0.a1

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001299
Physical Location & Seq
Forward (+)
11094581 .. 11095300
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G073300.1

Sequence Viewer

Length: 258 bp
ATGGAGCGATCCGGACGTATGTTTTCAACTGTCTTCATCCTTGTCCTGCTCTTTGTGGTTATTGGGATGGGTCCAATGGTTGCTGAGGGCAAGGCCGCAACAAAGGAGAATTCGAGGACTTGTGAGTCTCTGAGCACGAAATTCAAGGGACTTTGCTTCCGATCAAGCAACTGTGCAGATATTTGCAAAAAAGAGGGCTTCCTGGAAGGCAAATGTGCTGGCTTCAGGCTGAGATGTACATGCACTAAGAAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

86

Amino Acids

9.36

Weight (kDa)

9.32

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 3
AcsI RAATTY 2 cut(s) 109, 140
AcuI CTGAAG 1 cut(s) 208
AfaI GTAC 1 cut(s) 238
AgsI TTSAA 2 cut(s) 27, 145
AjnI CCWGG 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 3
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 1 cut(s) 93
ApoI RAATTY 2 cut(s) 109, 140
AspS9I GGNCC 1 cut(s) 71
AvaII GGWCC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 132
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 1 cut(s) 203
BseGI GGATG 2 cut(s) 36, 72
BseMII CTCAG 3 cut(s) 75, 122, 221
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 236
Bsp143I GATC 2 cut(s) 8, 161
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 3 cut(s) 76, 123, 222
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 1 cut(s) 3
BsrGI TGTACA 1 cut(s) 236
BssMI GATC 2 cut(s) 8, 161
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 31, 173
BstAUI TGTACA 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 4 cut(s) 84, 131, 230, 246
BstF5I GGATG 2 cut(s) 36, 72
BstKTI GATC 2 cut(s) 11, 164
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 8, 161
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 2 cut(s) 36, 72
Cac8I GCNNGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 237
CviAII CATG 1 cut(s) 240
CviJI RGCY 4 cut(s) 95, 198, 222, 229
CviKI_1 RGCY 4 cut(s) 95, 198, 222, 229
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 4 cut(s) 84, 131, 230, 246
DpnI GATC 2 cut(s) 10, 163
DpnII GATC 2 cut(s) 8, 161
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 243
FaiI YATR 2 cut(s) 20, 241
FaqI GGGAC 1 cut(s) 162
FatI CATG 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 23, 79
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 12
Hin1II CATG 1 cut(s) 243
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 132, 161
Hpy188III TCNNGA 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 31, 173
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 176, 186, 243
HpyF3I CTNAG 4 cut(s) 84, 131, 230, 246
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 1 cut(s) 243
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 2 cut(s) 8, 161
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 25, 59, 188, 204, 211, 215
MaeII ACGT 1 cut(s) 16
MalI GATC 2 cut(s) 10, 163
MboI GATC 2 cut(s) 8, 161
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 2 cut(s) 109, 140
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 3 cut(s) 79, 108, 187
MroI TCCGGA 1 cut(s) 11
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
NdeII GATC 2 cut(s) 8, 161
NlaIII CATG 1 cut(s) 243
NlaIV GGNNCC 1 cut(s) 72
NspI RCATGY 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 71
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 8, 161
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 137
SetI ASST 1 cut(s) 19
SinI GGWCC 1 cut(s) 71
Sse9I AATT 2 cut(s) 109, 140
SsiI CCGC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 31, 173
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 113
TasI AATT 2 cut(s) 109, 140
TatI WGTACW 1 cut(s) 236
TauI GCSGC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 2 cut(s) 109, 140
XceI RCATGY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.