FvH4_6g22740

Belongs to the DEFL family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
16359520 .. 16360166
647 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22740.t1

Sequence Viewer

Length: 243 bp
ATGGCAAATTCCATGCGTTTATTTTCATCCACCTTCATCCTCGTCTTGCTTTTGGTTGCGATAGAGATGGCGCCAAAGGTCGCTGAGGGTACATCATCATGCGAGAGACAGACCCAGAAACTCAAGGGGGTTTGCACGAGCTCCAGCTGTGAAACACAGTGTAAAAGTGAGGGGCACTCAGGAGTTGGTGTATTCGGAGTTTCGTTTCTTGCTTTTAAAAGTATTGGCTCATATTTCCTATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

8.53

Weight (kDa)

8.45

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 91
AluBI AGCT 2 cut(s) 141, 147
AluI AGCT 2 cut(s) 141, 147
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 143
BauI CACGAG 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 100
BfoI RGCGCY 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
BseGI GGATG 2 cut(s) 26, 36
BseMII CTCAG 2 cut(s) 75, 192
BseSI GKGCMC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 143, 177
BspCNI CTCAG 2 cut(s) 76, 191
BspLI GGNNCC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 71
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 84, 178
BstF5I GGATG 2 cut(s) 26, 36
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 177
BtsCI GGATG 2 cut(s) 26, 36
BtsIMutI CAGTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 90
CviAII CATG 2 cut(s) 13, 99
CviJI RGCY 3 cut(s) 141, 147, 228
CviKI_1 RGCY 3 cut(s) 141, 147, 228
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 84, 178
DinI GGCGCC 1 cut(s) 72
DraI TTTAAA 1 cut(s) 217
Ecl136II GAGCTC 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 143
EgeI GGCGCC 1 cut(s) 72
EheI GGCGCC 1 cut(s) 72
FaeI CATG 2 cut(s) 16, 102
FaiI YATR 4 cut(s) 14, 100, 232, 241
FatI CATG 2 cut(s) 12, 98
FokI GGATG 2 cut(s) 13, 23
FriOI GRGCYC 1 cut(s) 143
GlaI GCGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 127
HaeII RGCGCY 1 cut(s) 74
HhaI GCGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 2 cut(s) 16, 102
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 84, 178
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 2 cut(s) 16, 102
HspAI GCGC 1 cut(s) 71
KasI GGCGCC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 3 cut(s) 128, 157, 165
MhlI GDGCHC 2 cut(s) 143, 177
MluCI AATT 1 cut(s) 7
Mly113I GGCGCC 1 cut(s) 71
MnlI CCTC 3 cut(s) 50, 79, 163
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 147
NarI GGCGCC 1 cut(s) 71
NlaIII CATG 2 cut(s) 16, 102
NlaIV GGNNCC 1 cut(s) 72
PluTI GGCGCC 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 147
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
RseI CAYNNNNRTG 1 cut(s) 97
SacI GAGCTC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 216
SduI GDGCHC 2 cut(s) 143, 177
SetI ASST 4 cut(s) 35, 81, 143, 149
SfoI GGCGCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 7
SspDI GGCGCC 1 cut(s) 70
SstI GAGCTC 1 cut(s) 143
TaaI ACNGT 1 cut(s) 159
TasI AATT 1 cut(s) 7
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 15, 25
TspRI CASTG 1 cut(s) 164
XapI RAATTY 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.