pycom11g08970

Belongs to the DEFL family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
7119459 .. 7119809
351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08970.2

Sequence Viewer

Length: 264 bp
ATGGAGCGTTCAATGCATCTTGTTTCAACCGCCTTCGTTCTTGTCTTGCTTTTGGCTGCTATTGAGATGGGGCCAATGGGTGTTGAGGCAAAGATTGAGTCAAGCAAGGCAGTTGAGGGGAAGATCTGTGAGGTTCCAAGCACCCTGTTCAAAGGGTTGTGCTTTTCGTCTAACAACTGTAAACACACCTGTAGAAAGGAGCAATTCACCAGAGGCCATTGTAGTGCCTTGACTCGTGCTTGCGTGTGCACCAAAAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

9.5

Weight (kDa)

8.88

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 30
AgsI TTSAA 3 cut(s) 12, 27, 151
Alw21I GWGCWC 1 cut(s) 251
Alw44I GTGCAC 1 cut(s) 247
AoxI GGCC 2 cut(s) 71, 214
ApaLI GTGCAC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 251
BauI CACGAG 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 61
BfmI CTRYAG 1 cut(s) 190
BglII AGATCT 1 cut(s) 123
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 2 cut(s) 72, 135
BmsI GCATC 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 2 cut(s) 73, 216
BsiHKAI GWGCWC 1 cut(s) 251
BsnI GGCC 2 cut(s) 73, 216
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 1 cut(s) 30
BspANI GGCC 2 cut(s) 73, 216
BspLI GGNNCC 2 cut(s) 72, 135
BssMI GATC 1 cut(s) 123
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 73, 216
Cac8I GCNNGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 71
CviJI RGCY 3 cut(s) 56, 73, 216
CviKI_1 RGCY 3 cut(s) 56, 73, 216
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 2 cut(s) 73, 216
HinfI GANTC 2 cut(s) 98, 232
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 182, 249
Hpy8I GTNNAC 2 cut(s) 182, 249
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 16, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 4, 199
LpnPI CCDG 3 cut(s) 158, 202, 223
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 25
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 1 cut(s) 203
MlyI GAGTC 2 cut(s) 107, 226
MnlI CCTC 4 cut(s) 79, 109, 124, 206
Mph1103I ATGCAT 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeII GATC 1 cut(s) 123
NlaIV GGNNCC 2 cut(s) 72, 135
NsiI ATGCAT 1 cut(s) 18
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 2 cut(s) 106, 226
PpsI GAGTC 2 cut(s) 106, 226
PspN4I GGNNCC 2 cut(s) 72, 135
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 222
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 2 cut(s) 107, 226
SduI GDGCHC 1 cut(s) 251
SetI ASST 2 cut(s) 135, 191
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 30
TaaI ACNGT 1 cut(s) 179
TasI AATT 1 cut(s) 203
TseI GCWGC 1 cut(s) 56
VneI GTGCAC 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.