pycom16g00850

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001299
Physical Location & Seq
Reverse (-)
503374 .. 503896
523 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g00850.2

Sequence Viewer

Length: 261 bp
ATGCGTTTTGTTTCAGCTACCTTCATTCTCATCCTACTTTTAGCCACTATTGAGATGGGGCCAATGGCCGTTGAGGGAAGGAGTGGCATGACTAGCAAGGGAGCAGCTGAGAAAAAGACGTGCGATTCTCATCCGAGTAGCAAGTTCAAGGGAGTGTGCTTCTTCACAAACAACTGCGTAGACACCTGCAAATTAGAGGGCTCCAGTGGAGGACAATGCCGTGGCTTCCGCCGTATATGCATATGCACCAAACAATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

87

Amino Acids

9.29

Weight (kDa)

9.06

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 194
AccI GTMKAC 1 cut(s) 180
AciI CCGC 1 cut(s) 229
AcoI YGGCCR 1 cut(s) 66
AgsI TTSAA 1 cut(s) 148
AjiI CACGTC 1 cut(s) 120
AluBI AGCT 2 cut(s) 17, 107
AluI AGCT 2 cut(s) 17, 107
AoxI GGCC 2 cut(s) 59, 66
ApeKI GCWGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 49
BceAI ACGGC 3 cut(s) 53, 204, 216
BfaI CTAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 194
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 60, 202
BpmI CTGGAG 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 2 cut(s) 30, 130
BseJI GATNNNNATC 1 cut(s) 129
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 116
BshFI GGCC 2 cut(s) 61, 68
BsnI GGCC 2 cut(s) 61, 68
Bsp1286I GDGCHC 1 cut(s) 203
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 61, 68
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 60, 202
BspMI ACCTGC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 2 cut(s) 30, 130
BstMWI GCNNNNNNNGC 2 cut(s) 93, 237
BstV1I GCAGC 1 cut(s) 116
BsuRI GGCC 2 cut(s) 61, 68
BtgI CCRYGG 1 cut(s) 220
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 30, 130
BtsIMutI CAGTG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 1 cut(s) 88
CviJI RGCY 7 cut(s) 17, 44, 61, 68, 107, 201, 225
CviKI_1 RGCY 7 cut(s) 17, 44, 61, 68, 107, 201, 225
DdeI CTNAG 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 66
EciI GGCGGA 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 203
FaeI CATG 1 cut(s) 91
FaiI YATR 5 cut(s) 89, 236, 238, 242, 244
FatI CATG 1 cut(s) 87
FauNDI CATATG 1 cut(s) 242
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 2 cut(s) 17, 117
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 187
HaeIII GGCC 2 cut(s) 61, 68
Hin1II CATG 1 cut(s) 91
HinfI GANTC 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 135
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 31, 72
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 3 cut(s) 189, 240, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 237
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 1 cut(s) 91
LmnI GCTCC 2 cut(s) 101, 206
LpnPI CCDG 2 cut(s) 199, 217
Lsp1109I GCAGC 1 cut(s) 116
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 119
MboII GAAGA 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 1 cut(s) 191
MnlI CCTC 3 cut(s) 67, 190, 203
Mph1103I ATGCAT 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 93, 237
NdeI CATATG 1 cut(s) 242
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 2 cut(s) 60, 202
NsiI ATGCAT 1 cut(s) 242
PaqCI CACCTGC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 60, 202
PspPI GGNCC 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 107
SatI GCNGC 1 cut(s) 105
Sau96I GGNCC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 203
SetI ASST 5 cut(s) 19, 23, 109, 122, 188
Sse9I AATT 1 cut(s) 191
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 93
TaiI ACGT 1 cut(s) 122
TasI AATT 1 cut(s) 191
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 13
TspRI CASTG 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.