MD11G1108400.v1.1

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001299
Physical Location & Seq
Forward (+)
9545168 .. 9545743
576 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1108400.v1.1.491

Sequence Viewer

Length: 264 bp
ATGGAGCGTTCAATGTGTCTTCTTTCAACCGCCTTCATTCTTGTCTTGTTTTTGGCTGCTACCGAGATGGGGCCAATGGGTGTTGAGGCAAGGACTGAGCCAAGCAAGGCAGTTGAGGGGAAGATCTGTGAGGTTCCGAGCACCCTGTTCAAAGGGTTGTGCATTTCATCTAACAACTGTAAACACACCTGCAGAAAGGAGCAATTCACCAGAGGCCATTGTAGTGTCTTCACCCGTGCTTGCGTGTGCACCAAAAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

88

Amino Acids

9.57

Weight (kDa)

8.82

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 41 - 87 1.1e-14 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 197
AciI CCGC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 3 cut(s) 12, 27, 151
Alw21I GWGCWC 2 cut(s) 143, 251
Alw44I GTGCAC 1 cut(s) 247
AoxI GGCC 2 cut(s) 71, 214
ApaLI GTGCAC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 199, 223
BaeGI GKGCMC 1 cut(s) 251
BbsI GAAGAC 2 cut(s) 11, 220
Bbv12I GWGCWC 2 cut(s) 143, 251
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 61
BfmI CTRYAG 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 197
BglII AGATCT 1 cut(s) 123
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 2 cut(s) 72, 135
BpiI GAAGAC 2 cut(s) 11, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 2 cut(s) 73, 216
BsiHKAI GWGCWC 2 cut(s) 143, 251
BslI CCNNNNNNNGG 1 cut(s) 69
BsnI GGCC 2 cut(s) 73, 216
Bsp1286I GDGCHC 2 cut(s) 143, 251
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 1 cut(s) 30
BspANI GGCC 2 cut(s) 73, 216
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 72, 135
BspMAI CTGCAG 1 cut(s) 194
BspMI ACCTGC 1 cut(s) 197
BssMI GATC 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 2 cut(s) 11, 220
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 73, 216
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 71
CviJI RGCY 4 cut(s) 56, 73, 100, 216
CviKI_1 RGCY 4 cut(s) 56, 73, 100, 216
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 2 cut(s) 73, 216
HphI GGTGA 2 cut(s) 199, 223
Hpy166II GTNNAC 2 cut(s) 182, 249
Hpy188I TCNGA 1 cut(s) 138
Hpy8I GTNNAC 2 cut(s) 182, 249
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 162, 192, 249
HpyF3I CTNAG 1 cut(s) 96
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 4, 199
LpnPI CCDG 3 cut(s) 158, 202, 223
Lsp1109I GCAGC 1 cut(s) 43
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 3 cut(s) 11, 133, 220
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 143, 251
MluCI AATT 1 cut(s) 203
MnlI CCTC 4 cut(s) 79, 109, 124, 206
MslI CAYNNNNRTG 1 cut(s) 222
NdeII GATC 1 cut(s) 123
NlaIV GGNNCC 2 cut(s) 72, 135
PaqCI CACCTGC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 72, 135
PspPI GGNCC 1 cut(s) 71
PstI CTGCAG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 222
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 71
SduI GDGCHC 2 cut(s) 143, 251
SetI ASST 2 cut(s) 135, 191
SfcI CTRYAG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 30
TaaI ACNGT 1 cut(s) 179
TasI AATT 1 cut(s) 203
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 25, 156
VneI GTGCAC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.