MD11G1108800.v1.1

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001299
Physical Location & Seq
Forward (+)
9568003 .. 9568562
560 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1108800.v1.1.491

Sequence Viewer

Length: 264 bp
ATGGAGCGTTCAATGCGTCTTATTTCAGCTGCCTTCGTTGTTGTCTTACTTTTGGCCGCTACCGAGATGGGTCCAATGGGTATTGAGGCAAGGGTTGAGTCAAGCAAGGCAGTTGAGGGGAAGATCTGTGAGGTTCCGTGCACTCTGTTCAAAGGGTTGTGCTTTTCATCTAACAACTGTAAACACACATGCAGAAAGGAGCAATTCACCAGAGGCCATTGTAGTGTCTTCACCCGTGCTTGCGTGTGCACCAAAAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

88

Amino Acids

9.58

Weight (kDa)

8.98

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 41 - 87 4.1e-12 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 54
AgsI TTSAA 2 cut(s) 12, 151
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw21I GWGCWC 2 cut(s) 143, 251
Alw44I GTGCAC 2 cut(s) 139, 247
AoxI GGCC 2 cut(s) 54, 214
ApaLI GTGCAC 2 cut(s) 139, 247
ApeKI GCWGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 199, 223
AvaII GGWCC 1 cut(s) 71
BaeGI GKGCMC 2 cut(s) 143, 251
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 2 cut(s) 143, 251
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 61
BglII AGATCT 1 cut(s) 123
BisI GCNGC 2 cut(s) 30, 57
BlsI GCNGC 2 cut(s) 31, 58
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 2 cut(s) 72, 135
BpiI GAAGAC 1 cut(s) 220
BseSI GKGCMC 2 cut(s) 143, 251
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 56, 216
BsiHKAI GWGCWC 2 cut(s) 143, 251
BsnI GGCC 2 cut(s) 56, 216
Bsp1286I GDGCHC 2 cut(s) 143, 251
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 1 cut(s) 57
BspANI GGCC 2 cut(s) 56, 216
BspLI GGNNCC 2 cut(s) 72, 135
BssMI GATC 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 192
BstSLI GKGCMC 2 cut(s) 143, 251
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 56, 216
Cac8I GCNNGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 1 cut(s) 5
CviAII CATG 1 cut(s) 189
CviJI RGCY 3 cut(s) 29, 56, 216
CviKI_1 RGCY 3 cut(s) 29, 56, 216
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 71
FaeI CATG 1 cut(s) 192
FaiI YATR 1 cut(s) 190
FatI CATG 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 30, 57
Fsp4HI GCNGC 2 cut(s) 30, 57
GluI GCNGC 2 cut(s) 30, 57
HaeIII GGCC 2 cut(s) 56, 216
HgaI GACGC 1 cut(s) 5
Hin1II CATG 1 cut(s) 192
HinfI GANTC 1 cut(s) 98
HphI GGTGA 2 cut(s) 199, 223
Hpy166II GTNNAC 3 cut(s) 141, 182, 249
Hpy8I GTNNAC 3 cut(s) 141, 182, 249
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 141, 192, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
Hsp92II CATG 1 cut(s) 192
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 4, 199
LpnPI CCDG 1 cut(s) 223
Lsp1109I GCAGC 1 cut(s) 16
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 2 cut(s) 133, 220
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 143, 251
MluCI AATT 1 cut(s) 203
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 4 cut(s) 79, 109, 124, 206
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 2 cut(s) 72, 135
NspI RCATGY 1 cut(s) 192
PkrI GCNGC 2 cut(s) 31, 58
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 72, 135
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 222
SatI GCNGC 2 cut(s) 30, 57
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 107
SduI GDGCHC 2 cut(s) 143, 251
SetI ASST 2 cut(s) 31, 135
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 57
TaaI ACNGT 1 cut(s) 179
TasI AATT 1 cut(s) 203
TauI GCSGC 1 cut(s) 59
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 126
VneI GTGCAC 2 cut(s) 139, 247
VpaK11BI GGWCC 1 cut(s) 71
XceI RCATGY 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.