Prupe.7G071200_v2.0.a1

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001299
Physical Location & Seq
Forward (+)
10879360 .. 10880134
775 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G071200.1

Sequence Viewer

Length: 258 bp
ATGGAGGGATCCAAACGTATGTTTTCAACTGTCTTCATCCTCGTCCTGCTCTTTGTGGCTATTGGGACGGGTCCAATGGTTGCTGAGGGCAAGGTCGAAACAAAGGAGACGTCCAGGACTTGTGAGTCTTTGAGCACGAAATTCAAGGGACCTTGCATCCGATCAAGCAACTGTGCAAATATTTGCGAAGAAGAAGGCTTCAAGGGAGGCAAATGTGTTGGCTTCAGGCTGAGATGTACGTGCACTAAGAATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

86

Amino Acids

9.25

Weight (kDa)

8.88

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AatII GACGTC 1 cut(s) 113
AclWI GGATC 2 cut(s) 3, 16
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 1 cut(s) 238
AgsI TTSAA 3 cut(s) 27, 145, 202
AjnI CCWGG 1 cut(s) 113
Alw21I GWGCWC 2 cut(s) 137, 245
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 241
AlwI GGATC 2 cut(s) 3, 16
ApaLI GTGCAC 1 cut(s) 241
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspS9I GGNCC 2 cut(s) 71, 149
AvaII GGWCC 2 cut(s) 71, 149
BaeGI GKGCMC 1 cut(s) 245
BamHI GGATCC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 2 cut(s) 137, 245
BbvCI CCTCAGC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 2 cut(s) 71, 149
BmgT120I GGNCC 2 cut(s) 71, 149
BmiI GGNNCC 3 cut(s) 10, 72, 150
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 110
BseBI CCWGG 1 cut(s) 115
BseGI GGATG 2 cut(s) 36, 156
BseMII CTCAG 2 cut(s) 75, 221
BseSI GKGCMC 1 cut(s) 245
BsiHKAI GWGCWC 2 cut(s) 137, 245
BslFI GGGAC 2 cut(s) 79, 162
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 79, 162
Bsp1286I GDGCHC 2 cut(s) 137, 245
Bsp143I GATC 2 cut(s) 8, 161
BspCNI CTCAG 2 cut(s) 76, 222
BspLI GGNNCC 3 cut(s) 10, 72, 150
BspPI GGATC 2 cut(s) 3, 16
BssMI GATC 2 cut(s) 8, 161
BssNI GRCGYC 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 31, 173
BstACI GRCGYC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 240
BstDEI CTNAG 3 cut(s) 84, 230, 246
BstF5I GGATG 2 cut(s) 36, 156
BstKTI GATC 2 cut(s) 11, 164
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 2 cut(s) 8, 161
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BtsCI GGATG 2 cut(s) 36, 156
Cfr13I GGNCC 2 cut(s) 71, 149
Csp6I GTAC 1 cut(s) 237
CviJI RGCY 4 cut(s) 59, 198, 222, 229
CviKI_1 RGCY 4 cut(s) 59, 198, 222, 229
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 3 cut(s) 84, 230, 246
DpnI GATC 2 cut(s) 10, 163
DpnII GATC 2 cut(s) 8, 161
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Eco47I GGWCC 2 cut(s) 71, 149
Eco57I CTGAAG 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 113
Esp3I CGTCTC 1 cut(s) 101
FaiI YATR 1 cut(s) 20
FaqI GGGAC 2 cut(s) 79, 162
FokI GGATG 2 cut(s) 23, 143
Hin1I GRCGYC 1 cut(s) 110
HinfI GANTC 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 31, 173
HpyCH4IV ACGT 3 cut(s) 16, 110, 239
HpyCH4V TGCA 3 cut(s) 156, 176, 243
HpyF3I CTNAG 3 cut(s) 84, 230, 246
HpySE526I ACGT 3 cut(s) 16, 110, 239
Hsp92I GRCGYC 1 cut(s) 110
Kzo9I GATC 2 cut(s) 8, 161
LpnPI CCDG 4 cut(s) 59, 100, 127, 211
LweI GCATC 1 cut(s) 165
MaeII ACGT 3 cut(s) 16, 110, 239
MalI GATC 2 cut(s) 10, 163
MboI GATC 2 cut(s) 8, 161
MboII GAAGA 3 cut(s) 25, 200, 203
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 137, 245
MluCI AATT 2 cut(s) 140, 250
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 3 cut(s) 50, 79, 200
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
NdeII GATC 2 cut(s) 8, 161
NlaIV GGNNCC 3 cut(s) 10, 72, 150
PfoI TCCNGGA 1 cut(s) 113
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 240
PpuMI RGGWCCY 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 3 cut(s) 10, 72, 150
PspPI GGNCC 2 cut(s) 71, 149
PspPPI RGGWCCY 1 cut(s) 149
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 8, 161
Sau96I GGNCC 2 cut(s) 71, 149
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 2 cut(s) 137, 245
SetI ASST 5 cut(s) 19, 96, 113, 154, 242
SfaNI GCATC 1 cut(s) 165
SinI GGWCC 2 cut(s) 71, 149
Sse9I AATT 2 cut(s) 140, 250
SspI AATATT 1 cut(s) 181
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 31, 173
TaiI ACGT 3 cut(s) 19, 113, 242
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 140, 250
TspDTI ATGAA 1 cut(s) 25
VneI GTGCAC 1 cut(s) 241
VpaK11BI GGWCC 2 cut(s) 71, 149
XapI RAATTY 1 cut(s) 140
ZraI GACGTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.