Prupe.7G070900_v2.0.a1

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001299
Physical Location & Seq
Forward (+)
10869937 .. 10870557
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G070900.1

Sequence Viewer

Length: 258 bp
ATGGAGGGATCTAGACGTATGTTTTCAACTGTCTTCATCCTCATCCTCCTCCTTGTGGCTATTGAGACAGGTCCAATGGTTGCTGAGGGCAAGGTCGCAACAAAGGAGGAGTCAAGGACTTGTGAGTCTCTGAGCACGAAATTCAAGGGATTTTGCTTACGATCAAGCAGATGTGCAGAGGCTTGCCAAAAAGAGGGCTTCATGGGAGGCAAATGTCCTGGCTTCAGGCTGAGATGTACATGCACTAAGAAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

86

Amino Acids

9.38

Weight (kDa)

9.2

Isoelectric Point (pI)

63.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 208
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 2 cut(s) 55, 193
AgsI TTSAA 2 cut(s) 27, 145
AjnI CCWGG 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 2 cut(s) 59, 132
AlwI GGATC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspS9I GGNCC 1 cut(s) 71
AvaII GGWCC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 59, 132
BfaI CTAG 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 193
BseBI CCWGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 36, 42
BseLI CCNNNNNNNGG 2 cut(s) 55, 193
BseMII CTCAG 3 cut(s) 75, 122, 221
BseRI GAGGAG 2 cut(s) 38, 122
BsgI GTGCAG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 55, 193
BsmAI GTCTC 2 cut(s) 59, 132
Bsp1286I GDGCHC 1 cut(s) 137
Bsp1407I TGTACA 1 cut(s) 236
Bsp143I GATC 2 cut(s) 8, 161
BspCNI CTCAG 3 cut(s) 76, 123, 222
BspPI GGATC 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 236
BssMI GATC 2 cut(s) 8, 161
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 31
BstAUI TGTACA 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 4 cut(s) 84, 131, 230, 246
BstF5I GGATG 2 cut(s) 36, 42
BstKTI GATC 2 cut(s) 11, 164
BstMAI GTCTC 2 cut(s) 59, 132
BstMBI GATC 2 cut(s) 8, 161
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BtsCI GGATG 2 cut(s) 36, 42
Cac8I GCNNGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 202, 240
CviJI RGCY 5 cut(s) 59, 182, 198, 222, 229
CviKI_1 RGCY 5 cut(s) 59, 182, 198, 222, 229
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 4 cut(s) 84, 131, 230, 246
DpnI GATC 2 cut(s) 10, 163
DpnII GATC 2 cut(s) 8, 161
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 217
FaeI CATG 2 cut(s) 205, 243
FaiI YATR 3 cut(s) 20, 203, 241
FatI CATG 2 cut(s) 201, 239
FokI GGATG 2 cut(s) 23, 29
FspBI CTAG 1 cut(s) 12
Hin1II CATG 2 cut(s) 205, 243
HinfI GANTC 2 cut(s) 110, 125
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 176, 243
HpyF3I CTNAG 4 cut(s) 84, 131, 230, 246
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 2 cut(s) 205, 243
Kzo9I GATC 2 cut(s) 8, 161
LpnPI CCDG 4 cut(s) 54, 204, 211, 231
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 16
MalI GATC 2 cut(s) 10, 163
MboI GATC 2 cut(s) 8, 161
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 1 cut(s) 140
MlyI GAGTC 2 cut(s) 119, 134
MnlI CCTC 8 cut(s) 50, 56, 59, 79, 100, 172, 187, 200
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
NdeII GATC 2 cut(s) 8, 161
NlaIII CATG 2 cut(s) 205, 243
NspI RCATGY 1 cut(s) 243
PleI GAGTC 2 cut(s) 118, 133
PpsI GAGTC 2 cut(s) 118, 133
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 8, 161
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 2 cut(s) 119, 134
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 137
SetI ASST 3 cut(s) 19, 73, 96
SinI GGWCC 1 cut(s) 71
Sse9I AATT 1 cut(s) 140
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 19
TasI AATT 1 cut(s) 140
TatI WGTACW 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 25, 190
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 140
XbaI TCTAGA 1 cut(s) 11
XceI RCATGY 1 cut(s) 243
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.