pycom13g00950

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001299
Physical Location & Seq
Reverse (-)
613233 .. 613604
372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g00950.1

Sequence Viewer

Length: 264 bp
ATGGAGCGTTCAATGCATCTTGTTTCAGCCGCATTCGTTCTTGTTATGCTTTTCGCTGCTACCGAGATGGGGCCAATGGGTGTTGAGGCAAGGAGCAAGTCAGGCAAGGCAGTTAAGGAAAGAACCTGCGAGGCTGCGAGTGGCAAGTTCAAGGGGTTGTGCTTTTCGTCTACCAACTGTAAAAACACCTGCAAAATGGAGAAATTCACTGGAGGGAAATGTCAGGGCTTTCGCCGTAGATGCATGTGCAACAAAAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

88

Amino Acids

9.56

Weight (kDa)

9.66

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 41 - 87 9.5e-16 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 197
Acc36I ACCTGC 2 cut(s) 134, 197
AccI GTMKAC 1 cut(s) 170
AciI CCGC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 2 cut(s) 12, 151
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 56, 134
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 43, 121
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 219
BfuAI ACCTGC 2 cut(s) 134, 197
BisI GCNGC 3 cut(s) 30, 57, 135
BlsI GCNGC 3 cut(s) 31, 58, 136
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 72
BmsI GCATC 2 cut(s) 25, 230
BpmI CTGGAG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 43, 121
BshFI GGCC 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 69
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 73
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 72
BspMI ACCTGC 2 cut(s) 134, 197
BsrI ACTGG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 179
BstMWI GCNNNNNNNGC 3 cut(s) 13, 102, 240
BstNSI RCATGY 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 43, 121
BsuRI GGCC 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 2 cut(s) 134, 197
Cfr13I GGNCC 1 cut(s) 71
CviAII CATG 1 cut(s) 244
CviJI RGCY 4 cut(s) 29, 73, 134, 228
CviKI_1 RGCY 4 cut(s) 29, 73, 134, 228
EcoT22I ATGCAT 2 cut(s) 18, 245
FaeI CATG 1 cut(s) 247
FaiI YATR 2 cut(s) 47, 245
FatI CATG 1 cut(s) 243
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 3 cut(s) 30, 57, 135
Fsp4HI GCNGC 3 cut(s) 30, 57, 135
GluI GCNGC 3 cut(s) 30, 57, 135
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 171
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 4 cut(s) 16, 192, 243, 249
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 102, 240
Hsp92II CATG 1 cut(s) 247
LmnI GCTCC 2 cut(s) 4, 93
LpnPI CCDG 5 cut(s) 87, 139, 195, 202, 209
Lsp1109I GCAGC 2 cut(s) 43, 121
LweI GCATC 2 cut(s) 25, 230
MluCI AATT 1 cut(s) 203
MnlI CCTC 3 cut(s) 79, 124, 206
Mph1103I ATGCAT 2 cut(s) 18, 245
MseI TTAA 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 13, 102, 240
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 72
NsiI ATGCAT 2 cut(s) 18, 245
NspI RCATGY 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PctI GAATGC 1 cut(s) 32
PkrI GCNGC 3 cut(s) 31, 58, 136
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 30, 57, 135
Sau96I GGNCC 1 cut(s) 71
SetI ASST 2 cut(s) 128, 191
SfaNI GCATC 2 cut(s) 25, 230
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 30
TaaI ACNGT 1 cut(s) 179
TasI AATT 1 cut(s) 203
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 214
TseI GCWGC 2 cut(s) 56, 134
TspRI CASTG 1 cut(s) 214
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 170
Zsp2I ATGCAT 2 cut(s) 18, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.