Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Reverse (-)

5846002 .. 5846589

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTATGGTGGTGGGAGTTGCGATGGGAAATATTGCGCTTGGGGCCGAAACGGTCGGGCAGATCAACGAGGCCTACAAAACAAAACCAATGCTGAAAAAGCCATTAGACGAGTGTAGTATGAGATACAAAACGATCGTAGACGTTGACGTCCACACTGCCATTATATCTATCAAAGGAAACCCTAAGTTCGCTGAAGGGGCTGTTGTTGACGCCGGCGTGGAAGCTTCCATATGCGAAGGAGGGTTTACCAAAGGCCAATCTCCGTTGACCAGTTTGACTCAGAGAATGGAAAAGATTTGCGATGTGACCAGAGCCATCATCCGAATGTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030312 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

112

Amino Acids

11.99

Weight (kDa)

7.69

Isoelectric Point (pI)

10.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AatII	GACGTC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	2 cut(s)	150, 213
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AoxI	GGCC	3 cut(s)	45, 72, 256
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	45
BccI	CCATC	2 cut(s)	19, 326
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	46
BsaHI	GRCGYC	2 cut(s)	150, 213
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	273
Bsh1285I	CGRYCG	2 cut(s)	57, 138
BshFI	GGCC	3 cut(s)	47, 74, 258
BsiEI	CGRYCG	2 cut(s)	57, 138
BsiSI	CCGG	1 cut(s)	216
BsnI	GGCC	3 cut(s)	47, 74, 258
Bsp143I	GATC	2 cut(s)	63, 135
BspANI	GGCC	3 cut(s)	47, 74, 258
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	215
BssMI	GATC	2 cut(s)	63, 135
BssNI	GRCGYC	2 cut(s)	150, 213
Bst4CI	ACNGT	1 cut(s)	55
BstACI	GRCGYC	2 cut(s)	150, 213
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	186, 282
BstF5I	GGATG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	66, 138
BstMBI	GATC	2 cut(s)	63, 135
BstMCI	CGRYCG	2 cut(s)	57, 138
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 100, 200
BsuRI	GGCC	3 cut(s)	47, 74, 258
BtgZI	GCGATG	2 cut(s)	38, 318
BtsCI	GGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	45
CseI	GACGC	1 cut(s)	221
CviJI	RGCY	8 cut(s)	5, 47, 74, 103, 203, 227, 258, 317
CviKI_1	RGCY	8 cut(s)	5, 47, 74, 103, 203, 227, 258, 317
DdeI	CTNAG	2 cut(s)	186, 282
DpnI	GATC	2 cut(s)	65, 137
DpnII	GATC	2 cut(s)	63, 135
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
Eco147I	AGGCCT	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	216
FaiI	YATR	5 cut(s)	8, 122, 167, 233, 235
FauNDI	CATATG	1 cut(s)	233
FblI	GTMKAC	1 cut(s)	141
FokI	GGATG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	39
HaeIII	GGCC	3 cut(s)	47, 74, 258
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	2 cut(s)	150, 213
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	3 cut(s)	148, 211, 270
HindII	GTYRAC	3 cut(s)	148, 211, 270
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	6 cut(s)	142, 148, 154, 211, 249, 270
Hpy188I	TCNGA	2 cut(s)	285, 326
Hpy8I	GTNNAC	6 cut(s)	142, 148, 154, 211, 249, 270
HpyAV	CCTTC	2 cut(s)	191, 233
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	2 cut(s)	144, 150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 100, 200
HpyF3I	CTNAG	2 cut(s)	186, 282
HpySE526I	ACGT	2 cut(s)	144, 150
Hsp92I	GRCGYC	2 cut(s)	150, 213
HspAI	GCGC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	63, 135
LpnPI	CCDG	3 cut(s)	229, 286, 325
MaeII	ACGT	2 cut(s)	144, 150
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	65, 137
MboI	GATC	2 cut(s)	63, 135
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	2 cut(s)	64, 236
MreI	CGCCGGCG	1 cut(s)	215
MroNI	GCCGGC	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	326
MspI	CCGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	44, 100, 200
NaeI	GCCGGC	1 cut(s)	217
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	2 cut(s)	63, 135
NgoMIV	GCCGGC	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	217
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	45
PvuI	CGATCG	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	326
Sau3AI	GATC	2 cut(s)	63, 135
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	274
SetI	ASST	3 cut(s)	147, 153, 229
SgeI	CNNG	8 cut(s)	53, 70, 82, 124, 228, 232, 285, 324
SgrAI	CRCCGGYG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	74
SspI	AATATT	1 cut(s)	34
StuI	AGGCCT	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	2 cut(s)	147, 153
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	141
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.